263718

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 2926839..2927517 Replicon chromosome
Accession NZ_CP110362
Organism Dickeya dadantii strain XJ12

Toxin (Protein)


Gene name cptA Uniprot ID E0SLQ1
Locus tag OL445_RS13305 Protein ID WP_013316362.1
Coordinates 2927086..2927517 (+) Length 144 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag OL445_RS13300 Protein ID WP_013316361.1
Coordinates 2926839..2927105 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OL445_RS13280 2923288..2923938 + 651 WP_013316357.1 LysE family translocator -
OL445_RS13285 2924008..2924616 - 609 WP_013316358.1 HD domain-containing protein -
OL445_RS13290 2924825..2925475 + 651 WP_013316359.1 hemolysin III family protein -
OL445_RS13295 2925548..2926528 - 981 WP_013316360.1 tRNA-modifying protein YgfZ -
OL445_RS13300 2926839..2927105 + 267 WP_013316361.1 FAD assembly factor SdhE Antitoxin
OL445_RS13305 2927086..2927517 + 432 WP_013316362.1 protein YgfX Toxin
OL445_RS13310 2927614..2928132 - 519 WP_013316363.1 flavodoxin FldB -
OL445_RS13315 2928261..2929586 - 1326 WP_013316364.1 MFS transporter -
OL445_RS13320 2929849..2930748 + 900 WP_013316366.1 site-specific tyrosine recombinase XerD -
OL445_RS13325 2930837..2931553 + 717 WP_171849779.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-132)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 144 a.a.        Molecular weight: 16838.53 Da        Isoelectric Point: 10.7687

>T263718 WP_013316362.1 NZ_CP110362:2927086-2927517 [Dickeya dadantii]
VAQWQCDLRVSWRMQLFSLLTHGFLVLMILLAPWPDGYAPLWLGLVTLVVFGFVFSQRIIKTRQGEISLHGENQLHWQQR
DWQIVRRPWLMRNGVLLSLRAVDGKGHQRLWLASDSMGNEEWRLLRQLLQQHSLQGTESSHHH

Download         Length: 432 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10476.98 Da        Isoelectric Point: 5.5981

>AT263718 WP_013316361.1 NZ_CP110362:2926839-2927105 [Dickeya dadantii]
MDINNKSRIHWACRRGMRELDISIMPFFEHEYDTLSDDDKQQFIRLLQCDDPDLFNWLMNHGEPVDPALKRMVSLIQTRN
KDRGPVAM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB E0SLQ1

Antitoxin

Source ID Structure

References