Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pemIK/MazF(toxin)
Location 242627..243269 Replicon chromosome
Accession NC_017208
Organism Bacillus thuringiensis serovar chinensis CT-43

Toxin (Protein)


Gene name pemK Uniprot ID R8I8B8
Locus tag CT43_RS01275 Protein ID WP_000635965.1
Coordinates 242919..243269 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name pemI Uniprot ID R8I8H2
Locus tag CT43_RS01270 Protein ID WP_000004570.1
Coordinates 242627..242914 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CT43_RS01245 237944..238906 + 963 WP_000961144.1 UV DNA damage repair endonuclease UvsE -
CT43_RS01250 238899..239471 - 573 WP_000908526.1 rhomboid family intramembrane serine protease -
CT43_RS01255 239565..239924 + 360 WP_000583419.1 holo-ACP synthase -
CT43_RS01260 240081..241031 + 951 WP_002094231.1 outer membrane lipoprotein carrier protein LolA -
CT43_RS01265 241149..242318 + 1170 WP_000390593.1 alanine racemase -
CT43_RS01270 242627..242914 + 288 WP_000004570.1 antitoxin EndoAI Antitoxin
CT43_RS01275 242919..243269 + 351 WP_000635965.1 type II toxin-antitoxin system endoribonuclease NdoA Toxin
CT43_RS01280 243338..245507 + 2170 Protein_230 RNA-binding transcriptional accessory protein -
CT43_RS31445 245565..245681 - 117 WP_001143640.1 cortex morphogenetic protein CmpA -
CT43_RS01285 245877..246335 + 459 WP_000503730.1 SprT family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(4-111)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12948.04 Da        Isoelectric Point: 5.7168

>T26371 WP_000635965.1 NC_017208:242919-243269 [Bacillus thuringiensis serovar chinensis CT-43]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEIDAKKYGFERDSVILLEQI
RTIDKQRLTDKITHLDEVMMSRVDEALQISLGLIDF

Download         Length: 351 bp

>T26371 NC_017208:242919-243269 [Bacillus thuringiensis serovar chinensis CT-43]
TTGATTGTAAAACGCGGCGACGTGTATTTTGCAGACCTTTCCCCAGTTGTTGGTTCTGAGCAAGGAGGCGTTCGTCCGGT
TCTTGTCATTCAAAATGACATCGGAAATCGTTTTAGTCCAACGGTGATTGTAGCGGCTATTACTGCACAGATTCAAAAAG
CGAAATTACCCACTCATGTGGAAATTGATGCGAAAAAGTATGGTTTTGAGAGAGATTCTGTTATTTTACTTGAGCAGATT
CGAACAATCGATAAGCAACGCTTAACGGACAAAATCACTCATTTAGATGAAGTGATGATGAGTCGTGTAGATGAAGCGTT
ACAAATTAGTTTAGGACTAATAGATTTTTAA

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10780.36 Da        Isoelectric Point: 8.9605

>AT26371 WP_000004570.1 NC_017208:242627-242914 [Bacillus thuringiensis serovar chinensis CT-43]
VSESSVTTEIVVRLPKQMVTELDGIGKQENKNRHELICQATQLLLRQHKTKKRYQHESMRRGYIEMGKINLGIASEAFLA
EYEAAHTVERLVSGG

Download         Length: 288 bp

>AT26371 NC_017208:242627-242914 [Bacillus thuringiensis serovar chinensis CT-43]
GTGTCCGAATCAAGTGTAACTACTGAAATCGTGGTTCGGTTGCCAAAGCAAATGGTAACGGAATTGGACGGAATTGGAAA
ACAAGAGAATAAGAATCGCCATGAACTAATTTGCCAGGCAACACAATTGTTATTGCGTCAACATAAGACGAAGAAACGCT
ACCAACATGAATCAATGCGACGTGGGTATATTGAAATGGGAAAAATTAATCTTGGTATTGCATCTGAAGCTTTCTTAGCG
GAGTATGAAGCAGCTCATACAGTAGAACGCTTAGTTAGCGGGGGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A366G118

Antitoxin

Source ID Structure
AlphaFold DB A0A366FY90

References