Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2770432..2770641 | Replicon | chromosome |
| Accession | NZ_CP110354 | ||
| Organism | Enterobacter hormaechei strain ECC2783 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2770445..2770548 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2770432..2770641 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLI86_RS13280 (OLI86_13280) | 2766700..2768148 | + | 1449 | WP_195892607.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OLI86_RS13285 (OLI86_13285) | 2768255..2768494 | + | 240 | WP_003859885.1 | YebV family protein | - |
| OLI86_RS13290 (OLI86_13290) | 2768529..2769173 | - | 645 | WP_017693252.1 | protein-serine/threonine phosphatase | - |
| OLI86_RS13295 (OLI86_13295) | 2769341..2770321 | + | 981 | WP_023303891.1 | VirK/YbjX family protein | - |
| OLI86_RS13300 (OLI86_13300) | 2770367..2770564 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2770432..2770641 | + | 210 | - | - | Antitoxin |
| - | 2770445..2770548 | - | 104 | - | - | Toxin |
| OLI86_RS13305 (OLI86_13305) | 2770690..2771028 | - | 339 | WP_003859787.1 | YebY family protein | - |
| OLI86_RS13310 (OLI86_13310) | 2771045..2771914 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| OLI86_RS13315 (OLI86_13315) | 2771916..2772287 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| OLI86_RS13320 (OLI86_13320) | 2772425..2772655 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| OLI86_RS13325 (OLI86_13325) | 2772767..2773417 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| OLI86_RS13330 (OLI86_13330) | 2773442..2774104 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2753787..2835466 | 81679 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263700 NZ_CP110354:c2770548-2770445 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT263700 NZ_CP110354:2770432-2770641 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
