Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 156123..156628 Replicon chromosome
Accession NZ_CP110345
Organism Pseudomonas aeruginosa strain PALA30

Toxin (Protein)


Gene name parE Uniprot ID V6A7K8
Locus tag PALA30_RS00700 Protein ID WP_003083773.1
Coordinates 156123..156404 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID A0A1C7BDS9
Locus tag PALA30_RS00705 Protein ID WP_003083775.1
Coordinates 156401..156628 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PALA30_RS00675 (PALA30_00129) 151374..152723 + 1350 WP_003119513.1 C4-dicarboxylate transporter DctA -
PALA30_RS00680 (PALA30_00130) 152772..153458 + 687 WP_003083762.1 FadR/GntR family transcriptional regulator -
PALA30_RS00685 (PALA30_00131) 153559..154293 + 735 WP_003083764.1 GntR family transcriptional regulator -
PALA30_RS00690 (PALA30_00132) 154473..154883 + 411 WP_003110659.1 aegerolysin family protein -
PALA30_RS00695 (PALA30_00133) 154915..155823 - 909 WP_003083769.1 LysR family transcriptional regulator -
PALA30_RS00700 (PALA30_00134) 156123..156404 - 282 WP_003083773.1 type II toxin-antitoxin system toxin ParE Toxin
PALA30_RS00705 (PALA30_00135) 156401..156628 - 228 WP_003083775.1 CopG family ribbon-helix-helix protein Antitoxin
PALA30_RS00710 (PALA30_00136) 156804..157424 - 621 WP_003101226.1 hypothetical protein -
PALA30_RS00715 (PALA30_00137) 157525..158025 + 501 WP_003162763.1 LEA type 2 family protein -
PALA30_RS00720 (PALA30_00138) 158098..158439 + 342 WP_003101229.1 zinc ribbon domain-containing protein YjdM -
PALA30_RS00725 (PALA30_00139) 158521..159948 - 1428 WP_003083784.1 GABA permease -
PALA30_RS00730 (PALA30_00140) 160117..161610 - 1494 WP_003101230.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10462.19 Da        Isoelectric Point: 10.0435

>T263634 WP_003083773.1 NZ_CP110345:c156404-156123 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8556.58 Da        Isoelectric Point: 5.5740

>AT263634 WP_003083775.1 NZ_CP110345:c156628-156401 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6XRW

Antitoxin

Source ID Structure
AlphaFold DB A0A1C7BDS9

References