263615

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ygfYX/Cpta(toxin)
Location 3571001..3571643 Replicon chromosome
Accession NZ_CP110338
Organism Shewanella algae strain B2215466

Toxin (Protein)


Gene name ygfX Uniprot ID A0A5N5U1D5
Locus tag OLL83_RS16005 Protein ID WP_025010549.1
Coordinates 3571001..3571423 (-) Length 141 a.a.

Antitoxin (Protein)


Gene name ygfY Uniprot ID A0A7X5Z2N1
Locus tag OLL83_RS16010 Protein ID WP_028779782.1
Coordinates 3571404..3571643 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OLL83_RS15980 (OLL83_003196) 3566518..3566997 - 480 WP_071238276.1 SoxR reducing system RseC family protein -
OLL83_RS15985 (OLL83_003197) 3567008..3567940 - 933 WP_025887844.1 MucB/RseB C-terminal domain-containing protein -
OLL83_RS15990 (OLL83_003198) 3567950..3568570 - 621 WP_208172601.1 RseA family anti-sigma factor -
OLL83_RS15995 (OLL83_003199) 3568595..3569173 - 579 WP_025010551.1 RNA polymerase sigma factor RpoE -
OLL83_RS16000 (OLL83_003200) 3569373..3570983 + 1611 WP_025010550.1 L-aspartate oxidase -
OLL83_RS16005 (OLL83_003201) 3571001..3571423 - 423 WP_025010549.1 protein YgfX Toxin
OLL83_RS16010 (OLL83_003202) 3571404..3571643 - 240 WP_028779782.1 succinate dehydrogenase assembly factor 2 Antitoxin
OLL83_RS16015 (OLL83_003203) 3571742..3572650 - 909 WP_025010548.1 transcriptional activator NhaR -
OLL83_RS16020 (OLL83_003204) 3572667..3573050 - 384 WP_062793820.1 hypothetical protein -
OLL83_RS16025 (OLL83_003205) 3573047..3574222 - 1176 WP_025010547.1 Na+/H+ antiporter NhaA -
OLL83_RS16030 (OLL83_003206) 3574339..3575133 - 795 WP_264920177.1 thymidylate synthase -
OLL83_RS16035 (OLL83_003207) 3575133..3575960 - 828 WP_123116742.1 prolipoprotein diacylglyceryl transferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(5-135)

Antitoxin

Flavinator of succinate dehydrogenase

(5-75)


Sequences

Toxin        


Download         Length: 141 a.a.        Molecular weight: 16309.86 Da        Isoelectric Point: 7.0359

>T263615 WP_025010549.1 NZ_CP110338:c3571423-3571001 [Shewanella algae]
VAGQRHRFQLSSSFSQYLSLTVLAAICLSSFLAWPALDYPFYLLFKYLCLLLMLAGFGLALWRLRCWQLCFWLNELGEGQ
FEPGSSFELSGRPWVSPFVVTFTYQGEDNYGRCWLFADMFDDTDYRHLCRLLLQRSKSAN

Download         Length: 423 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9247.74 Da        Isoelectric Point: 5.0633

>AT263615 WP_028779782.1 NZ_CP110338:c3571643-3571404 [Shewanella algae]
MSTPRVKWACRRGMLELDVLFQPFVEQHYETLSPEDKALFVRLLECEDPELFAWFMGHEQCPDPQLAQMVVRVRGRAAP

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A7X5Z2N1

References