Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 65336..65880 Replicon chromosome
Accession NZ_CP110301
Organism Xanthomonas citri pv. fuscans strain CFBP 6533

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OM953_RS00280 Protein ID WP_005912562.1
Coordinates 65602..65880 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OM953_RS00275 Protein ID WP_099802649.1
Coordinates 65336..65593 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OM953_RS00260 (OM953_00260) 60456..61937 - 1482 WP_264684734.1 ribonuclease H-like domain-containing protein -
OM953_RS00265 (OM953_00265) 61934..64429 - 2496 WP_162808326.1 DEAD/DEAH box helicase -
OM953_RS00270 (OM953_00270) 64607..65269 + 663 WP_162808327.1 hemolysin III family protein -
OM953_RS00275 (OM953_00275) 65336..65593 + 258 WP_099802649.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OM953_RS00280 (OM953_00280) 65602..65880 + 279 WP_005912562.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OM953_RS00290 (OM953_00290) 66060..66959 - 900 WP_007973076.1 SDR family NAD(P)-dependent oxidoreductase -
OM953_RS00295 (OM953_00295) 67019..67756 - 738 WP_099802650.1 SDR family oxidoreductase -
OM953_RS00300 (OM953_00300) 67882..68793 + 912 WP_099802651.1 LysR family transcriptional regulator -
OM953_RS00305 (OM953_00305) 68994..69704 + 711 WP_099802652.1 hypothetical protein -
OM953_RS00310 (OM953_00310) 69930..70406 + 477 WP_099802653.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10415.00 Da        Isoelectric Point: 10.1557

>T263593 WP_005912562.1 NZ_CP110301:65602-65880 [Xanthomonas citri pv. fuscans]
VPALADLDAIADYIAIDNAPAAAALVKRVFAHVEQLIEHPDSGSRPQELKRSRYRQIVEPPCRVFYRVDGQRIVVVHVMR
SERALRGNRLSR

Download         Length: 279 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9618.09 Da        Isoelectric Point: 8.6223

>AT263593 WP_099802649.1 NZ_CP110301:65336-65593 [Xanthomonas citri pv. fuscans]
MRTELVTTLKRQATELLAAAERDKEPILITQHGLPSAYLVDVASYERMQQRIALLEGIARGEMGVADGRTLSHEQAQQRM
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References