Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 4830537..4831081 Replicon chromosome
Accession NZ_CP110298
Organism Xanthomonas citri pv. fuscans strain BRM48906

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OM948_RS20870 Protein ID WP_005912562.1
Coordinates 4830537..4830815 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OM948_RS20875 Protein ID WP_099802649.1
Coordinates 4830824..4831081 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OM948_RS20840 (OM948_20840) 4826011..4826487 - 477 WP_099802653.1 hypothetical protein -
OM948_RS20845 (OM948_20845) 4826713..4827423 - 711 WP_099802652.1 hypothetical protein -
OM948_RS20850 (OM948_20850) 4827624..4828535 - 912 WP_099802651.1 LysR family transcriptional regulator -
OM948_RS20855 (OM948_20855) 4828661..4829398 + 738 WP_099802650.1 SDR family oxidoreductase -
OM948_RS20860 (OM948_20860) 4829458..4830357 + 900 WP_007973076.1 SDR family NAD(P)-dependent oxidoreductase -
OM948_RS20870 (OM948_20870) 4830537..4830815 - 279 WP_005912562.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OM948_RS20875 (OM948_20875) 4830824..4831081 - 258 WP_099802649.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OM948_RS20880 (OM948_20880) 4831148..4831810 - 663 WP_162808327.1 hemolysin III family protein -
OM948_RS20885 (OM948_20885) 4831988..4834483 + 2496 WP_162808326.1 DEAD/DEAH box helicase -
OM948_RS20890 (OM948_20890) 4834480..4835955 + 1476 WP_099802648.1 ribonuclease H-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10415.00 Da        Isoelectric Point: 10.1557

>T263591 WP_005912562.1 NZ_CP110298:c4830815-4830537 [Xanthomonas citri pv. fuscans]
VPALADLDAIADYIAIDNAPAAAALVKRVFAHVEQLIEHPDSGSRPQELKRSRYRQIVEPPCRVFYRVDGQRIVVVHVMR
SERALRGNRLSR

Download         Length: 279 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9618.09 Da        Isoelectric Point: 8.6223

>AT263591 WP_099802649.1 NZ_CP110298:c4831081-4830824 [Xanthomonas citri pv. fuscans]
MRTELVTTLKRQATELLAAAERDKEPILITQHGLPSAYLVDVASYERMQQRIALLEGIARGEMGVADGRTLSHEQAQQRM
ARWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References