Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 293450..293682 | Replicon | chromosome |
| Accession | NZ_CP110260 | ||
| Organism | Escherichia albertii strain KBSW16i | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 293578..293680 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 293450..293682 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N6N74_RS01430 | 290380..291042 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| N6N74_RS01435 | 291066..291278 | - | 213 | Protein_278 | carbon-nitrogen hydrolase family protein | - |
| N6N74_RS01440 | 291444..291674 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| N6N74_RS01445 | 291813..292190 | + | 378 | WP_044708629.1 | CopC domain-containing protein YobA | - |
| N6N74_RS01450 | 292194..293066 | + | 873 | WP_044708630.1 | copper homeostasis membrane protein CopD | - |
| N6N74_RS01455 | 293079..293420 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 293450..293682 | - | 233 | - | - | Antitoxin |
| - | 293578..293680 | + | 103 | - | - | Toxin |
| N6N74_RS01460 | 294292..294870 | + | 579 | WP_059238753.1 | bfpT-regulated chaperone | - |
| N6N74_RS01465 | 295327..295491 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| N6N74_RS01470 | 296066..296386 | + | 321 | WP_044712911.1 | hypothetical protein | - |
| N6N74_RS01475 | 296459..297916 | + | 1458 | WP_059227268.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 272666..315353 | 42687 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T263500 NZ_CP110260:293578-293680 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT263500 NZ_CP110260:c293682-293450 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
