Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafQ-DinJ
Location 2259289..2259841 Replicon chromosome
Accession NZ_CP110231
Organism Selenomonas sputigena strain KCOM 20461

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OL240_RS10360 Protein ID WP_264918297.1
Coordinates 2259289..2259567 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OL240_RS10365 Protein ID WP_264918299.1
Coordinates 2259557..2259841 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OL240_RS10335 (OL240_10335) 2254726..2255604 + 879 WP_264918290.1 GGDEF domain-containing protein -
OL240_RS10345 (OL240_10345) 2255852..2256505 - 654 WP_264918292.1 TrkA family potassium uptake protein -
OL240_RS10350 (OL240_10350) 2256516..2257838 - 1323 WP_264918293.1 TrkH family potassium uptake protein -
OL240_RS10355 (OL240_10355) 2258094..2259209 + 1116 WP_264918295.1 peptide-methionine (R)-S-oxide reductase MsrB -
OL240_RS10360 (OL240_10360) 2259289..2259567 - 279 WP_264918297.1 type II toxin-antitoxin system YafQ family toxin Toxin
OL240_RS10365 (OL240_10365) 2259557..2259841 - 285 WP_264918299.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
OL240_RS10370 (OL240_10370) 2259948..2260850 - 903 WP_264918301.1 PRC-barrel domain-containing protein -
OL240_RS10375 (OL240_10375) 2260907..2262928 - 2022 WP_264918303.1 tetratricopeptide repeat protein -
OL240_RS10380 (OL240_10380) 2263240..2263506 + 267 WP_006190627.1 HPr family phosphocarrier protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-68)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10863.68 Da        Isoelectric Point: 8.8288

>T263469 WP_264918297.1 NZ_CP110231:c2259567-2259289 [Selenomonas sputigena]
MQYELKYTRAFRRGYKRAKKRGLNLSLLGEIVEMLRCGKKLPKKYADHCLSGDFSQCRECHIQPDWLLVYRIDDDILTLT
LMDTGTHAELFH

Download         Length: 279 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10369.81 Da        Isoelectric Point: 4.6337

>AT263469 WP_264918299.1 NZ_CP110231:c2259841-2259557 [Selenomonas sputigena]
MATVSAQIRLDPEVKARSMALFQSLGLDLSTAVNVFLRQCLIHRGLPFSVKEGTYSAELLEAIAEAEQIAHDPSVPSYKS
WKELEEALESEHAV

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References