Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2040817..2040931 | Replicon | chromosome |
| Accession | NZ_CP110227 | ||
| Organism | Serratia rubidaea strain AO4-P6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2040834..2040930 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2040817..2040931 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLD77_RS09510 (OLD77_09510) | 2036329..2037288 | + | 960 | WP_269875740.1 | prolyl aminopeptidase | - |
| OLD77_RS09515 (OLD77_09515) | 2037335..2037565 | - | 231 | WP_015672700.1 | DNA polymerase III subunit theta | - |
| OLD77_RS09520 (OLD77_09520) | 2038079..2038600 | + | 522 | WP_015672699.1 | non-heme ferritin | - |
| OLD77_RS09525 (OLD77_09525) | 2039014..2039397 | + | 384 | WP_269875741.1 | CopC domain-containing protein YobA | - |
| OLD77_RS09530 (OLD77_09530) | 2039401..2040282 | + | 882 | WP_269875742.1 | copper homeostasis membrane protein CopD | - |
| OLD77_RS09535 (OLD77_09535) | 2040351..2040692 | + | 342 | WP_235081389.1 | YebY family protein | - |
| - | 2040817..2040931 | - | 115 | - | - | Antitoxin |
| - | 2040834..2040930 | + | 97 | - | - | Toxin |
| OLD77_RS09540 (OLD77_09540) | 2041009..2041131 | - | 123 | Protein_1862 | integrase | - |
| OLD77_RS09545 (OLD77_09545) | 2041117..2041392 | + | 276 | WP_269876099.1 | DUF1364 domain-containing protein | - |
| OLD77_RS09550 (OLD77_09550) | 2041392..2041754 | + | 363 | WP_269876100.1 | antiterminator Q family protein | - |
| OLD77_RS09555 (OLD77_09555) | 2042299..2043123 | - | 825 | WP_269875743.1 | hypothetical protein | - |
| OLD77_RS09560 (OLD77_09560) | 2043427..2043675 | + | 249 | WP_269875744.1 | phage holin | - |
| OLD77_RS09565 (OLD77_09565) | 2043678..2044172 | + | 495 | WP_269875745.1 | lysozyme | - |
| OLD77_RS09570 (OLD77_09570) | 2044169..2044546 | + | 378 | WP_269875746.1 | hypothetical protein | - |
| OLD77_RS09575 (OLD77_09575) | 2044733..2045215 | + | 483 | WP_269875748.1 | hypothetical protein | - |
| OLD77_RS09580 (OLD77_09580) | 2045332..2045544 | + | 213 | WP_269875750.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2033319..2061556 | 28237 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T263461 NZ_CP110227:2040834-2040930 [Serratia rubidaea]
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCAATAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 115 bp
>AT263461 NZ_CP110227:c2040931-2040817 [Serratia rubidaea]
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
TAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTTATTGCAGGGCTTGTTCAGCCATGCACTTTAAG
