Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-dinJ/YafQ-RelB
Location 15455..15977 Replicon plasmid pZMOB01
Accession NC_017180
Organism Zymomonas mobilis subsp. mobilis ATCC 10988

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag ZMOB_RS09980 Protein ID WP_014466399.1
Coordinates 15455..15727 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name dinJ Uniprot ID A0A0H3G4I9
Locus tag ZMOB_RS09145 Protein ID WP_014466400.1
Coordinates 15714..15977 (-) Length 88 a.a.

Genomic Context

ZMOB_RS09120ZMOB_RS09125ZMOB_RS09130ZMOB_RS09140ZMOB_RS09985ZMOB_RS09155ZMOB_RS09160ZMOB_RS09165ZMOB_RS09980ZMOB_RS09145ZMOB_RS09150ZMOB_RS09170ZMOB_RS09175
Location: 10567..10851 (285 bp)
Type: Others
Protein ID: WP_014466394.1
Location: 10954..11586 (633 bp)
Type: Others
Protein ID: WP_014466395.1
Location: 11583..11858 (276 bp)
Type: Others
Protein ID: WP_014466396.1
Location: 13115..14713 (1599 bp)
Type: Others
Protein ID: WP_014466397.1
Location: 16853..17131 (279 bp)
Type: Others
Protein ID: WP_014466402.1
Location: 17121..17438 (318 bp)
Type: Others
Protein ID: WP_014466403.1
Location: 17563..17814 (252 bp)
Type: Others
Protein ID: WP_014466405.1
Location: 17921..19504 (1584 bp)
Type: Others
Protein ID: WP_014466406.1
Location: 15455..15727 (273 bp)
Type: Toxin
Protein ID: WP_014466399.1
Location: 15714..15977 (264 bp)
Type: Antitoxin
Protein ID: WP_014466400.1
Location: 16153..16605 (453 bp)
Type: Others
Protein ID: WP_014466401.1
Location: 19646..20209 (564 bp)
Type: Others
Protein ID: WP_185738133.1
Location: 20608..20889 (282 bp)
Type: Others
Protein ID: WP_012817695.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
ZMOB_RS0912010567..10851+285WP_014466394.1type II toxin-antitoxin system RelE/ParE family toxin-
ZMOB_RS0912510954..11586+633WP_014466395.1ParA family protein-
ZMOB_RS0913011583..11858+276WP_014466396.1hypothetical protein-
ZMOB_RS0914013115..14713+1599WP_014466397.1AAA family ATPase-
ZMOB_RS0998015455..15727-273WP_014466399.1type II toxin-antitoxin system YafQ family toxinToxin
ZMOB_RS0914515714..15977-264WP_014466400.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
ZMOB_RS0915016153..16605-453WP_014466401.1hypothetical protein-
ZMOB_RS0998516853..17131+279WP_014466402.1ogr/Delta-like zinc finger family protein-
ZMOB_RS0915517121..17438+318WP_014466403.1hypothetical protein-
ZMOB_RS0916017563..17814+252WP_014466405.1DUF2312 domain-containing protein-
ZMOB_RS0916517921..19504+1584WP_014466406.1helix-turn-helix domain-containing protein-
ZMOB_RS0917019646..20209-564WP_185738133.1hypothetical protein-
ZMOB_RS0917520608..20889-282WP_012817695.1helix-turn-helix domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideNon-Mobilizable plasmid--1..3247932479


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(1-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-81)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10846.52 Da        Isoelectric Point: 9.8184

>T26346 WP_014466399.1 NC_017180:c15727-15455 [Zymomonas mobilis subsp. mobilis ATCC 10988]
MRMIERTSQFKRDYKRERKSDPQLDKYFIPVVTHLASDVMLAPRLKDHSLTGNWNDHRECHIKPNLLLIYRKPDEYTLHL
VRLGSHSELF

Download         Length: 273 bp

>T26346 NC_017180:c15727-15455 [Zymomonas mobilis subsp. mobilis ATCC 10988]
ATGCGGATGATTGAGCGAACATCTCAATTTAAACGCGATTACAAAAGAGAACGAAAGTCAGATCCGCAGTTAGATAAATA
TTTTATTCCTGTCGTTACCCATCTAGCCAGTGACGTTATGCTAGCTCCTCGTTTGAAGGATCATTCGTTGACGGGAAACT
GGAATGACCATCGGGAATGTCACATTAAGCCTAATTTGCTTTTAATTTACCGGAAGCCTGACGAATACACCCTTCATTTG
GTGCGGCTAGGATCTCATTCAGAGTTGTTTTGA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9511.13 Da        Isoelectric Point: 8.6818

>AT26346 WP_014466400.1 NC_017180:c15977-15714 [Zymomonas mobilis subsp. mobilis ATCC 10988]
MAANQLVQARINGQIKQEAAVILESIGLTVSDAVRMMLTKVVQEKALPFDPLTPNKKTLAAMKDARAGKMKKFDSVQSLM
DDLHADD

Download         Length: 264 bp

>AT26346 NC_017180:c15977-15714 [Zymomonas mobilis subsp. mobilis ATCC 10988]
ATGGCAGCTAATCAGCTCGTACAGGCTCGCATTAACGGACAGATAAAACAGGAGGCTGCTGTTATATTAGAAAGCATTGG
TCTGACGGTATCTGATGCTGTCCGCATGATGCTGACAAAAGTCGTTCAAGAAAAAGCTCTGCCTTTTGACCCTTTGACTC
CAAACAAAAAGACATTGGCTGCCATGAAAGACGCGCGTGCCGGTAAAATGAAAAAGTTCGACAGTGTTCAATCTCTGATG
GATGACCTTCATGCGGATGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A0H3G4I9

References