Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1872526..1872671 | Replicon | chromosome |
| Accession | NZ_CP110167 | ||
| Organism | Klebsiella pneumoniae strain YZ22CS094 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1872562..1872664 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1872526..1872671 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK019_RS09115 | 1867656..1869716 | + | 2061 | WP_019705169.1 | oligopeptidase B | - |
| OK019_RS09120 | 1869720..1870379 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OK019_RS09125 | 1870458..1870688 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OK019_RS09130 | 1870801..1871175 | + | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| OK019_RS09135 | 1871179..1872048 | + | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| OK019_RS09140 | 1872065..1872403 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1872526..1872671 | - | 146 | - | - | Antitoxin |
| - | 1872562..1872664 | + | 103 | - | - | Toxin |
| OK019_RS09145 | 1873039..1873182 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OK019_RS09150 | 1873287..1874255 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OK019_RS09155 | 1874412..1875065 | + | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| OK019_RS09160 | 1875062..1875253 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OK019_RS09165 | 1875351..1875590 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OK019_RS09170 | 1875706..1877139 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T263316 NZ_CP110167:1872562-1872664 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT263316 NZ_CP110167:c1872671-1872526 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
