Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916741..1916886 | Replicon | chromosome |
| Accession | NZ_CP110160 | ||
| Organism | Klebsiella pneumoniae strain YZ22CS089 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916777..1916879 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916741..1916886 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OMD38_RS09360 | 1911871..1913931 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OMD38_RS09365 | 1913935..1914594 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| OMD38_RS09370 | 1914673..1914903 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OMD38_RS09375 | 1915016..1915390 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OMD38_RS09380 | 1915394..1916263 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| OMD38_RS09385 | 1916280..1916618 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1916741..1916886 | - | 146 | - | - | Antitoxin |
| - | 1916777..1916879 | + | 103 | - | - | Toxin |
| OMD38_RS09390 | 1917255..1917398 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OMD38_RS09395 | 1917503..1918471 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OMD38_RS09400 | 1918628..1919281 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OMD38_RS09405 | 1919278..1919469 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OMD38_RS09410 | 1919567..1919806 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OMD38_RS09415 | 1919922..1921355 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T263298 NZ_CP110160:1916777-1916879 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT263298 NZ_CP110160:c1916886-1916741 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
