Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 704815..705494 Replicon chromosome
Accession NZ_CP110160
Organism Klebsiella pneumoniae strain YZ22CS089

Toxin (Protein)


Gene name ykfI Uniprot ID A0A0C7K7A4
Locus tag OMD38_RS03490 Protein ID WP_020324801.1
Coordinates 705153..705494 (+) Length 114 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID A0A0C7KEL2
Locus tag OMD38_RS03485 Protein ID WP_020324792.1
Coordinates 704815..705132 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OMD38_RS03460 (700029) 700029..703181 + 3153 WP_022631414.1 AIDA repeat-containing protein -
OMD38_RS03465 (703274) 703274..703513 + 240 WP_020324820.1 DUF905 domain-containing protein -
OMD38_RS03470 (703616) 703616..704074 + 459 WP_020324813.1 antirestriction protein -
OMD38_RS03475 (704090) 704090..704566 + 477 WP_020324797.1 RadC family protein -
OMD38_RS03480 (704575) 704575..704802 + 228 WP_020324796.1 DUF987 domain-containing protein -
OMD38_RS03485 (704815) 704815..705132 + 318 WP_020324792.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
OMD38_RS03490 (705153) 705153..705494 + 342 WP_020324801.1 TA system toxin CbtA family protein Toxin
OMD38_RS03495 (705610) 705610..706443 + 834 WP_020324805.1 DUF4942 domain-containing protein -
OMD38_RS03505 (706746) 706746..707252 + 507 WP_002917636.1 G/U mismatch-specific DNA glycosylase -
OMD38_RS03510 (707352) 707352..709193 - 1842 WP_004174339.1 RNA polymerase sigma factor RpoD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - fimA / fimI / fimC / fimD / fimD / fimF / fimG 658028..706443 48415


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-111)

Antitoxin

Antitoxin CbeA

(5-103)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12818.91 Da        Isoelectric Point: 9.1484

>T263296 WP_020324801.1 NZ_CP110160:705153-705494 [Klebsiella pneumoniae]
MKTLPAIISRAAKPCLSPVAVWQMLLTRLLEKHYGLTLNDTPFCDETVIQEHIDAGITLADAVNFLVEKYGLVRIDRNGF
VWQEQSPYLRAVDILRARQATGLLRQSRNNAIR

Download         Length: 342 bp

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11915.51 Da        Isoelectric Point: 6.6246

>AT263296 WP_020324792.1 NZ_CP110160:704815-705132 [Klebsiella pneumoniae]
MSNITWGLQRDTTPRLGARLVQEGNQLHYLADRASMTGKFSDAECRKLDETFPHFISQMESMLITGEMNPRHAHCVTLYH
NGFTCEADTLGSCGYVYIAVYPIQR

Download         Length: 318 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0C7K7A4

Antitoxin

Source ID Structure
AlphaFold DB A0A0C7KEL2

References