Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916859..1917004 | Replicon | chromosome |
| Accession | NZ_CP110153 | ||
| Organism | Klebsiella pneumoniae strain YZ22CS088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916895..1916997 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916859..1917004 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OMD36_RS09355 | 1911989..1914049 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OMD36_RS09360 | 1914053..1914712 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| OMD36_RS09365 | 1914791..1915021 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OMD36_RS09370 | 1915134..1915508 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OMD36_RS09375 | 1915512..1916381 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| OMD36_RS09380 | 1916398..1916736 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1916859..1917004 | - | 146 | - | - | Antitoxin |
| - | 1916895..1916997 | + | 103 | - | - | Toxin |
| OMD36_RS09385 | 1917373..1917516 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OMD36_RS09390 | 1917621..1918589 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OMD36_RS09395 | 1918746..1919399 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OMD36_RS09400 | 1919396..1919587 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OMD36_RS09405 | 1919685..1919924 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OMD36_RS09410 | 1920040..1921473 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T263278 NZ_CP110153:1916895-1916997 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT263278 NZ_CP110153:c1917004-1916859 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
