Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1511169..1511314 | Replicon | chromosome |
| Accession | NZ_CP110145 | ||
| Organism | Klebsiella pneumoniae strain YZ22CK024 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1511205..1511307 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1511169..1511314 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OMD35_RS07370 | 1506299..1508359 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OMD35_RS07375 | 1508363..1509022 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OMD35_RS07380 | 1509101..1509331 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OMD35_RS07385 | 1509444..1509818 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| OMD35_RS07390 | 1509822..1510691 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| OMD35_RS07395 | 1510708..1511046 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1511169..1511314 | - | 146 | - | - | Antitoxin |
| - | 1511205..1511307 | + | 103 | - | - | Toxin |
| OMD35_RS07400 | 1511683..1511826 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| OMD35_RS07405 | 1511931..1512899 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| OMD35_RS07410 | 1513056..1513709 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| OMD35_RS07415 | 1513706..1513897 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OMD35_RS07420 | 1513995..1514234 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OMD35_RS07425 | 1514350..1515783 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T263224 NZ_CP110145:1511205-1511307 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT263224 NZ_CP110145:c1511314-1511169 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
