Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1965572..1965717 | Replicon | chromosome |
| Accession | NZ_CP110142 | ||
| Organism | Klebsiella pneumoniae strain SBH193 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1965608..1965710 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1965572..1965717 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OMD37_RS09690 | 1960702..1962762 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| OMD37_RS09695 | 1962766..1963425 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| OMD37_RS09700 | 1963504..1963734 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OMD37_RS09705 | 1963847..1964221 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OMD37_RS09710 | 1964225..1965094 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| OMD37_RS09715 | 1965111..1965449 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1965572..1965717 | - | 146 | - | - | Antitoxin |
| - | 1965608..1965710 | + | 103 | - | - | Toxin |
| OMD37_RS09720 | 1966085..1966228 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OMD37_RS09725 | 1966333..1967301 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OMD37_RS09730 | 1967458..1968111 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| OMD37_RS09735 | 1968108..1968299 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OMD37_RS09740 | 1968397..1968636 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OMD37_RS09745 | 1968752..1970185 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T263202 NZ_CP110142:1965608-1965710 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT263202 NZ_CP110142:c1965717-1965572 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
