Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2640019..2640469 Replicon chromosome
Accession NZ_CP110128
Organism Pseudomonas sp. WJP1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag OH720_RS11985 Protein ID WP_272605775.1
Coordinates 2640019..2640288 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OH720_RS11990 Protein ID WP_272606435.1
Coordinates 2640278..2640469 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OH720_RS11955 (OH720_11960) 2635257..2636036 + 780 WP_008062560.1 ABC transporter substrate-binding protein -
OH720_RS11960 (OH720_11965) 2636145..2637257 + 1113 WP_008062559.1 M14 family metallopeptidase -
OH720_RS11965 (OH720_11970) 2637269..2637886 - 618 WP_272605773.1 hypothetical protein -
OH720_RS11970 (OH720_11975) 2638059..2638418 - 360 Protein_2361 PAAR domain-containing protein -
OH720_RS11975 (OH720_11980) 2638624..2639340 + 717 WP_008062553.1 alpha/beta hydrolase-fold protein -
OH720_RS11980 (OH720_11985) 2639344..2639916 - 573 WP_272605774.1 hypothetical protein -
OH720_RS11985 (OH720_11990) 2640019..2640288 - 270 WP_272605775.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OH720_RS11990 (OH720_11995) 2640278..2640469 - 192 WP_272606435.1 antitoxin Antitoxin
OH720_RS11995 (OH720_12000) 2640767..2641441 - 675 WP_272605776.1 glutathione S-transferase N-terminal domain-containing protein -
OH720_RS12000 (OH720_12005) 2641525..2642313 - 789 WP_272605777.1 hypothetical protein -
OH720_RS12005 (OH720_12010) 2642426..2643319 - 894 WP_272605778.1 LysR family transcriptional regulator -
OH720_RS12010 (OH720_12015) 2643434..2644183 + 750 WP_272605779.1 3-oxoacyl-ACP reductase family protein -
OH720_RS12015 (OH720_12020) 2644208..2644810 + 603 WP_272605780.1 NAD(P)-binding domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10273.81 Da        Isoelectric Point: 7.2738

>T263174 WP_272605775.1 NZ_CP110128:c2640288-2640019 [Pseudomonas sp. WJP1]
MRVEWRPEARSDLLQILNYIGDRNLVAALALNQAIETATSALPEHPYLYRCGRLTGTREIVVHPNYLVVYRVTDQIQILS
VLHARQEYP

Download         Length: 270 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7340.26 Da        Isoelectric Point: 8.7092

>AT263174 WP_272606435.1 NZ_CP110128:c2640469-2640278 [Pseudomonas sp. WJP1]
MNVRFSSIVSEFETAEQATRYDRWFRAKVQASLDDPRPSIPHDQVMAEMRALLESKRNKRDAG

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References