Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2233122..2233290 | Replicon | chromosome |
| Accession | NZ_CP110123 | ||
| Organism | Klebsiella michiganensis strain MX581 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2233180..2233283 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2233122..2233290 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OKE89_RS10715 (OKE89_10715) | 2228249..2230309 | + | 2061 | WP_009652043.1 | oligopeptidase B | - |
| OKE89_RS10720 (OKE89_10720) | 2230316..2230975 | - | 660 | WP_004852093.1 | exodeoxyribonuclease X | - |
| OKE89_RS10725 (OKE89_10725) | 2231054..2231284 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| OKE89_RS10730 (OKE89_10730) | 2231420..2231794 | + | 375 | WP_004852090.1 | CopC domain-containing protein YobA | - |
| OKE89_RS10735 (OKE89_10735) | 2231799..2232668 | + | 870 | WP_004852088.1 | copper homeostasis membrane protein CopD | - |
| OKE89_RS10740 (OKE89_10740) | 2232685..2233023 | + | 339 | WP_049106124.1 | YebY family protein | - |
| - | 2233122..2233290 | - | 169 | - | - | Antitoxin |
| - | 2233180..2233283 | + | 104 | - | - | Toxin |
| OKE89_RS10745 (OKE89_10745) | 2233408..2234367 | - | 960 | WP_049106125.1 | spore coat protein U domain-containing protein | - |
| OKE89_RS10750 (OKE89_10750) | 2234382..2236712 | - | 2331 | WP_064402597.1 | fimbria/pilus outer membrane usher protein | - |
| OKE89_RS10755 (OKE89_10755) | 2236715..2237479 | - | 765 | WP_049106126.1 | fimbria/pilus periplasmic chaperone | - |
| OKE89_RS10760 (OKE89_10760) | 2237498..2238016 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T263162 NZ_CP110123:2233180-2233283 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT263162 NZ_CP110123:c2233290-2233122 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
