Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3628202..3628296 Replicon chromosome
Accession NC_017168
Organism Yersinia pestis A1122

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3628203..3628296 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3628202..3628296 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A1122_RS17010 3623395..3625473 - 2079 WP_002211100.1 flagellar biosynthesis protein FlhA -
A1122_RS17015 3625473..3626633 - 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
A1122_RS17020 3627165..3627623 + 459 WP_002211098.1 hypothetical protein -
A1122_RS17025 3627617..3627943 + 327 WP_002211097.1 DUF1493 family protein -
- 3628202..3628296 + 95 - - Antitoxin
- 3628203..3628296 - 94 - - Toxin
A1122_RS17035 3628466..3628807 - 342 WP_002211095.1 YebY family protein -
A1122_RS17040 3628904..3629788 - 885 WP_002211094.1 copper homeostasis membrane protein CopD -
A1122_RS17045 3629791..3630177 - 387 WP_002211093.1 CopC domain-containing protein YobA -
A1122_RS17050 3630574..3631083 - 510 WP_002211092.1 non-heme ferritin -
A1122_RS17055 3631484..3631714 + 231 WP_002211091.1 DNA polymerase III subunit theta -
A1122_RS17060 3631774..3632724 - 951 WP_002211090.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T26315 NC_017168:c3628296-3628203 [Yersinia pestis A1122]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT26315 NC_017168:3628202-3628296 [Yersinia pestis A1122]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References