Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1933199..1933344 | Replicon | chromosome |
| Accession | NZ_CP110080 | ||
| Organism | Buttiauxella sp. WJP83 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1933234..1933338 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1933199..1933344 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OH773_RS08915 (OH773_08915) | 1929517..1930179 | - | 663 | WP_270144947.1 | exodeoxyribonuclease X | - |
| OH773_RS08920 (OH773_08920) | 1930218..1930949 | - | 732 | WP_270144949.1 | carbon-nitrogen hydrolase family protein | - |
| OH773_RS08925 (OH773_08925) | 1931083..1931313 | - | 231 | WP_034495983.1 | DNA polymerase III subunit theta | - |
| OH773_RS08930 (OH773_08930) | 1931462..1931836 | + | 375 | WP_270144954.1 | CopC domain-containing protein YobA | - |
| OH773_RS08935 (OH773_08935) | 1931842..1932714 | + | 873 | WP_270144956.1 | copper homeostasis membrane protein CopD | - |
| OH773_RS08940 (OH773_08940) | 1932741..1933082 | + | 342 | WP_270144958.1 | YebY family protein | - |
| - | 1933199..1933344 | - | 146 | - | - | Antitoxin |
| - | 1933234..1933338 | + | 105 | - | - | Toxin |
| OH773_RS08945 (OH773_08945) | 1933706..1933969 | - | 264 | WP_270144961.1 | DUF1471 domain-containing protein | - |
| OH773_RS08950 (OH773_08950) | 1934260..1934979 | + | 720 | WP_270144963.1 | DUF1571 domain-containing protein | - |
| OH773_RS08955 (OH773_08955) | 1934995..1935465 | + | 471 | WP_183269551.1 | SRPBCC family protein | - |
| OH773_RS08960 (OH773_08960) | 1935539..1936561 | - | 1023 | WP_270144965.1 | transporter substrate-binding domain-containing protein | - |
| OH773_RS08965 (OH773_08965) | 1937094..1937621 | + | 528 | WP_270144967.1 | GNAT family N-acetyltransferase | - |
| OH773_RS08970 (OH773_08970) | 1937677..1938321 | + | 645 | WP_270144969.1 | metallophosphoesterase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T263087 NZ_CP110080:1933234-1933338 [Buttiauxella sp. WJP83]
GGCAAGGCGAAGTCTGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
TAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGAAGTCTGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
TAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT263087 NZ_CP110080:c1933344-1933199 [Buttiauxella sp. WJP83]
ACAGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCAGACTTCGCCTTGCCTTCTAAGAATAGATTACCGGCGCAGCTTTTCCAGT
ACAGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCAGACTTCGCCTTGCCTTCTAAGAATAGATTACCGGCGCAGCTTTTCCAGT
