Detailed information of TA system TA026276

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapC-mazE/VapC-MazE
• Location: 158319..158980
• Replicon: plasmid pAPA32-012
• Accession: NC_017134
• Organism: Acetobacter pasteurianus IFO 3283-32

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: C7JIL1
• Locus tag: APA32_RS14400
• Protein ID: WP_006115553.1
• Coordinates: 158672..158980 (-)
• Length: 103 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: C7JIL0
• Locus tag: APA32_RS14395
• Protein ID: WP_006115554.1
• Coordinates: 158319..158573 (-)
• Length: 85 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
APA32_RS16225	153805..154023	-	219	WP_170315285.1	WGR domain-containing protein	-
APA32_RS14350	154102..154380	-	279	WP_006115563.1	HU family DNA-binding protein	-
APA32_RS16680	155822..156007	-	186	WP_041633309.1	hypothetical protein	-
APA32_RS14370	156092..156907	+	816	WP_012813210.1	hypothetical protein	-
APA32_RS14375	156920..157324	+	405	WP_006115557.1	hypothetical protein	-
APA32_RS14380	157381..157701	-	321	WP_012813211.1	hypothetical protein	-
APA32_RS14385	157731..157931	-	201	WP_012813212.1	hypothetical protein	-
APA32_RS14390	157988..158317	-	330	WP_012813213.1	endoribonuclease MazF	-
APA32_RS14395	158319..158573	-	255	WP_006115554.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	Antitoxin
APA32_RS14400	158672..158980	-	309	WP_006115553.1	PIN domain-containing protein	Toxin
APA32_RS14405	158977..159249	-	273	WP_006115552.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
APA32_RS14410	159579..159950	-	372	Protein_154	integrase core domain-containing protein	-
APA32_RS14415	160044..161429	+	1386	WP_012813126.1	IS1380-like element IS1380A family transposase	-
APA32_RS16240	161561..162012	+	452	Protein_156	recombinase family protein	-
APA32_RS14420	162326..163099	-	774	WP_003631418.1	TSUP family transporter	-
APA32_RS14425	163291..163875	+	585	Protein_158	IS701 family transposase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..191443	191443

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Inner membrane protein YgfX (3-131)

Antitoxin

• Flavinator of succinate dehydrogenase (7-79)

Sequences

Toxin

Protein

• Length: 103 a.a.
• Molecular weight: 15177.21 Da
• Isoelectric Point: 5.5500

>T26276 WP_006115553.1 NC_017134:c158980-158672 [Acetobacter pasteurianus IFO 3283-32]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 309 bp

>T26276 NC_017134:c158980-158672 [Acetobacter pasteurianus IFO 3283-32]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

Antitoxin

Protein

• Length: 85 a.a.
• Molecular weight: 12528.03 Da
• Isoelectric Point: 5.5500

>AT26276 WP_006115554.1 NC_017134:c158573-158319 [Acetobacter pasteurianus IFO 3283-32]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFF

Nucleotide

• Length: 255 bp

>AT26276 NC_017134:c158573-158319 [Acetobacter pasteurianus IFO 3283-32]
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTT

Structures

Toxin

• AlphaFold DB: A0A401X8Y0

Antitoxin

• AlphaFold DB: A0A6P1QDC4