Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rnlAB/RnlA-RnlB |
| Location | 2857054..2858491 | Replicon | chromosome |
| Accession | NZ_CP110018 | ||
| Organism | Escherichia coli strain DH10B | ||
Toxin (Protein)
| Gene name | rnlA | Uniprot ID | P52129 |
| Locus tag | OLR78_RS14090 | Protein ID | WP_000155570.1 |
| Coordinates | 2857054..2858127 (+) | Length | 358 a.a. |
Antitoxin (Protein)
| Gene name | rnlB | Uniprot ID | P52130 |
| Locus tag | OLR78_RS14095 | Protein ID | WP_000461704.1 |
| Coordinates | 2858120..2858491 (+) | Length | 124 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR78_RS14075 (2852487) | 2852487..2854676 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| OLR78_RS14080 (2854673) | 2854673..2856289 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| OLR78_RS14085 (2856649) | 2856649..2856912 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| OLR78_RS14090 (2857054) | 2857054..2858127 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin |
| OLR78_RS14095 (2858120) | 2858120..2858491 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin |
| OLR78_RS14100 (2858846) | 2858846..2859709 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| OLR78_RS14105 (2859801) | 2859801..2860622 | + | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| OLR78_RS14110 (2860839) | 2860839..2861540 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| OLR78_RS14115 (2861581) | 2861581..2861817 | + | 237 | WP_001144029.1 | protein YpjK | - |
| OLR78_RS14120 (2861817) | 2861817..2862260 | + | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| OLR78_RS14125 (2862284) | 2862284..2862751 | + | 468 | WP_000702495.1 | protein YfjT | - |
| OLR78_RS14130 (2863138) | 2863138..2863290 | - | 153 | Protein_2763 | arsenate reductase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 358 a.a. Molecular weight: 40061.13 Da Isoelectric Point: 6.8293
>T262752 WP_000155570.1 NZ_CP110018:2857054-2858127 [Escherichia coli]
MTIRSYKNLNLVRANIETESRQFIENKNYSIQSIGPMPGSRAGLRVVFTRPGVNLATVDIFYNGDGSTTIQYLTGANRSL
GQELADHLFETINPAEFEQVNMVLQGFVETSVLPVLELSADESHIEFREHSRNAHTVVWKIISTSYQDELTVSLHITTGK
LQIQGRPLSCYRVFTFNLAALLDLQGLEKVLIRQEDGKANIVQQEVARTYLQTVMADAYPHLHVTAEKLLVSGLCVKLAA
PDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPAGFGTYFDKPAAHYILKPQFAATLRPEQINIISTAYTFFNVERHS
LFHMETVVDASRMISDMARLMGKATRAWGIIKDLYIV
MTIRSYKNLNLVRANIETESRQFIENKNYSIQSIGPMPGSRAGLRVVFTRPGVNLATVDIFYNGDGSTTIQYLTGANRSL
GQELADHLFETINPAEFEQVNMVLQGFVETSVLPVLELSADESHIEFREHSRNAHTVVWKIISTSYQDELTVSLHITTGK
LQIQGRPLSCYRVFTFNLAALLDLQGLEKVLIRQEDGKANIVQQEVARTYLQTVMADAYPHLHVTAEKLLVSGLCVKLAA
PDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPAGFGTYFDKPAAHYILKPQFAATLRPEQINIISTAYTFFNVERHS
LFHMETVVDASRMISDMARLMGKATRAWGIIKDLYIV
Download Length: 1074 bp
Antitoxin
Download Length: 124 a.a. Molecular weight: 13664.69 Da Isoelectric Point: 4.2391
>AT262752 WP_000461704.1 NZ_CP110018:2858120-2858491 [Escherichia coli]
MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSETTGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKI
IDEQDVPTHILSKLTFTLRNHPEYLEASVLSPDDVRQVLSMDF
MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSETTGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKI
IDEQDVPTHILSKLTFTLRNHPEYLEASVLSPDDVRQVLSMDF
Download Length: 372 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|