Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011650..2011921 | Replicon | chromosome |
| Accession | NZ_CP110017 | ||
| Organism | Escherichia coli strain HE_50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011688..2011791 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011650..2011921 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR76_RS10020 | 2008807..2010246 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OLR76_RS10025 | 2010364..2010600 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OLR76_RS10030 | 2010705..2010896 | + | 192 | WP_000457842.1 | YebW family protein | - |
| OLR76_RS10035 | 2010897..2011553 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2011650..2011921 | + | 272 | - | - | Antitoxin |
| - | 2011688..2011791 | - | 104 | - | - | Toxin |
| OLR76_RS10040 | 2011949..2012290 | - | 342 | WP_000976476.1 | YebY family protein | - |
| OLR76_RS10045 | 2012303..2013175 | - | 873 | WP_282983552.1 | copper homeostasis membrane protein CopD | - |
| OLR76_RS10050 | 2013179..2013553 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OLR76_RS10055 | 2013692..2013922 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OLR76_RS10060 | 2014024..2014680 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OLR76_RS10065 | 2014704..2015366 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262720 NZ_CP110017:c2011791-2011688 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT262720 NZ_CP110017:2011650-2011921 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
