262701

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) yfjZ-ypjF/CbtA-CbeA
Location 2868243..2868910 Replicon chromosome
Accession NZ_CP110016
Organism Escherichia coli strain HE_100

Toxin (Protein)


Gene name ypjF Uniprot ID Q46953
Locus tag OLR74_RS14185 Protein ID WP_001094400.1
Coordinates 2868581..2868910 (+) Length 110 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID P52141
Locus tag OLR74_RS14180 Protein ID WP_000072690.1
Coordinates 2868243..2868560 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OLR74_RS14145 (2863295) 2863295..2864304 - 1010 Protein_2766 arsenic transporter -
OLR74_RS14150 (2864446) 2864446..2866149 + 1704 WP_000896263.1 protein YfjW -
OLR74_RS14155 (2866760) 2866760..2866944 + 185 Protein_2768 DUF905 family protein -
OLR74_RS14160 (2866912) 2866912..2867034 - 123 WP_001407482.1 hypothetical protein -
OLR74_RS14165 (2867047) 2867047..2867505 + 459 WP_000211841.1 antirestriction protein -
OLR74_RS14170 (2867514) 2867514..2867996 + 483 WP_001407480.1 RadC family protein -
OLR74_RS14175 (2868005) 2868005..2868205 + 201 WP_001395452.1 DUF987 domain-containing protein -
OLR74_RS14180 (2868243) 2868243..2868560 + 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
OLR74_RS14185 (2868581) 2868581..2868910 + 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF Toxin
OLR74_RS14190 (2869274) 2869274..2873853 - 4580 Protein_2775 adhesin-like autotransporter YpjA/EhaD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-108)

Antitoxin

Antitoxin CbeA

(5-104)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 12308.21 Da        Isoelectric Point: 7.2761

>T262701 WP_001094400.1 NZ_CP110016:2868581-2868910 [Escherichia coli]
MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGF
SWQQQSPYISVVDILRARRSTGLLKTNVK

Download         Length: 330 bp

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11737.27 Da        Isoelectric Point: 6.4630

>AT262701 WP_000072690.1 NZ_CP110016:2868243-2868560 [Escherichia coli]
MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYH
NGFTCEADTLGSCGYVYIAVYPTQR

Download         Length: 318 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A373F4I3

Antitoxin

Source ID Structure
AlphaFold DB P52141

References