Detailed information of TA system TA026270

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/ParE-RelB
• Location: 134839..135389
• Replicon: plasmid pAPA26-013
• Accession: NC_017130
• Organism: Acetobacter pasteurianus IFO 3283-26

Toxin (Protein)

• Gene name: relE
• Uniprot ID: C7JII7
• Locus tag: APA26_RS14275
• Protein ID: WP_003618711.1
• Coordinates: 135096..135389 (+)
• Length: 98 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: D5QDQ9
• Locus tag: APA26_RS14270
• Protein ID: WP_003618686.1
• Coordinates: 134839..135099 (+)
• Length: 87 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
APA26_RS14240	131106..131687	+	582	WP_012813194.1	group III truncated hemoglobin	-
APA26_RS14245	131715..132014	+	300	WP_012813195.1	DUF1971 domain-containing protein	-
APA26_RS14250	132153..132986	-	834	Protein_121	IS5 family transposase	-
APA26_RS14265	134263..134625	+	363	WP_012813198.1	hypothetical protein	-
APA26_RS14270	134839..135099	+	261	WP_003618686.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	Antitoxin
APA26_RS14275	135096..135389	+	294	WP_003618711.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	Toxin
APA26_RS14280	135591..136574	-	984	WP_012813200.1	Abi family protein	-
APA26_RS14285	136832..138631	-	1800	WP_012813201.1	oleate hydratase	-
APA26_RS14290	138677..139264	-	588	Protein_128	DUF1275 domain-containing protein	-
APA26_RS14295	139250..139495	+	246	Protein_129	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..191419	191419

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HipA, N-terminal subdomain 1 (7-103)

Antitoxin

• Cro/C1-type helix-turn-helix domain (18-69)

Sequences

Toxin

Protein

• Length: 98 a.a.
• Molecular weight: 12579.08 Da
• Isoelectric Point: 12.7867

>T26270 WP_003618711.1 NC_017130:135096-135389 [Acetobacter pasteurianus IFO 3283-26]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKKKKKKKKKKKKK

Nucleotide

• Length: 294 bp

>T26270 NC_017130:135096-135389 [Acetobacter pasteurianus IFO 3283-26]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Antitoxin

Protein

• Length: 87 a.a.
• Molecular weight: 11169.16 Da
• Isoelectric Point: 12.7344

>AT26270 WP_003618686.1 NC_017130:134839-135099 [Acetobacter pasteurianus IFO 3283-26]
KKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK
KKKKKKK

Nucleotide

• Length: 261 bp

>AT26270 NC_017130:134839-135099 [Acetobacter pasteurianus IFO 3283-26]
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

Structures

Antitoxin

• AlphaFold DB: A0A6N3T9M6