Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011647..2011918 | Replicon | chromosome |
| Accession | NZ_CP110016 | ||
| Organism | Escherichia coli strain HE_100 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011685..2011788 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011647..2011918 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR74_RS10030 | 2008804..2010243 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OLR74_RS10035 | 2010361..2010597 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OLR74_RS10040 | 2010702..2010893 | + | 192 | WP_000457842.1 | YebW family protein | - |
| OLR74_RS10045 | 2010894..2011550 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2011647..2011918 | + | 272 | - | - | Antitoxin |
| - | 2011685..2011788 | - | 104 | - | - | Toxin |
| OLR74_RS10050 | 2011946..2012287 | - | 342 | WP_000976476.1 | YebY family protein | - |
| OLR74_RS10055 | 2012300..2013172 | - | 873 | WP_282983552.1 | copper homeostasis membrane protein CopD | - |
| OLR74_RS10060 | 2013176..2013550 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OLR74_RS10065 | 2013689..2013919 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OLR74_RS10070 | 2014021..2014677 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OLR74_RS10075 | 2014701..2015363 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262694 NZ_CP110016:c2011788-2011685 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT262694 NZ_CP110016:2011647-2011918 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
