Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011646..2011917 | Replicon | chromosome |
| Accession | NZ_CP110015 | ||
| Organism | Escherichia coli strain HE_150 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011684..2011787 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011646..2011917 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR73_RS10015 | 2008803..2010242 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OLR73_RS10020 | 2010360..2010596 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OLR73_RS10025 | 2010701..2010892 | + | 192 | WP_000457842.1 | YebW family protein | - |
| OLR73_RS10030 | 2010893..2011549 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2011646..2011917 | + | 272 | - | - | Antitoxin |
| - | 2011684..2011787 | - | 104 | - | - | Toxin |
| OLR73_RS10035 | 2011945..2012286 | - | 342 | WP_000976476.1 | YebY family protein | - |
| OLR73_RS10040 | 2012299..2013171 | - | 873 | WP_282983552.1 | copper homeostasis membrane protein CopD | - |
| OLR73_RS10045 | 2013175..2013549 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| OLR73_RS10050 | 2013688..2013918 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OLR73_RS10055 | 2014020..2014676 | + | 657 | WP_283012275.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OLR73_RS10060 | 2014700..2015362 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262668 NZ_CP110015:c2011787-2011684 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT262668 NZ_CP110015:2011646-2011917 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
