Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 235129..235676 Replicon chromosome
Accession NZ_CP110002
Organism Flavobacterium sp. N2155

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag OLM43_RS01130 Protein ID WP_264562096.1
Coordinates 235129..235428 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag OLM43_RS01135 Protein ID WP_264562097.1
Coordinates 235428..235676 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OLM43_RS01110 231096..231860 + 765 WP_264562092.1 peroxide stress protein YaaA -
OLM43_RS01115 231954..232232 + 279 WP_264562093.1 hypothetical protein -
OLM43_RS01120 232528..232701 - 174 WP_264562094.1 hypothetical protein -
OLM43_RS01125 233755..235050 + 1296 WP_264562095.1 group II intron reverse transcriptase/maturase -
OLM43_RS01130 235129..235428 - 300 WP_264562096.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OLM43_RS01135 235428..235676 - 249 WP_264562097.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
OLM43_RS01140 236199..236543 - 345 WP_264562098.1 SdpI family protein -
OLM43_RS01145 236609..237067 - 459 WP_264562099.1 hypothetical protein -
OLM43_RS01150 237069..238424 - 1356 WP_264562100.1 lysophospholipase -
OLM43_RS01155 238430..239008 - 579 WP_264562101.1 YIP1 family protein -
OLM43_RS01160 239012..239284 - 273 WP_257498579.1 DUF2089 domain-containing protein -
OLM43_RS01165 239413..240339 - 927 WP_264562102.1 EamA family transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-92)

Antitoxin

Antitoxin ParD

(4-72)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 12113.75 Da        Isoelectric Point: 6.4878

>T262630 WP_264562096.1 NZ_CP110002:c235428-235129 [Flavobacterium sp. N2155]
MGYKISHEANRDIENIWLYTYENWSLEQADRYINLIIDEIEYLAENPKSGKDYGHLRKGYFRSQIKSHFIFYKISLKREE
IEIIRVLHQRMDIESRLTE

Download         Length: 300 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9558.00 Da        Isoelectric Point: 10.3361

>AT262630 WP_264562097.1 NZ_CP110002:c235676-235428 [Flavobacterium sp. N2155]
MAKNTSILLGDYFDNFISRQIKTGKYSSASEVVRAALRMFEYEESKRTELIKELKKGEKSGFVKNFDRKELLNSLHQKHL
SK

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References