262574

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 328064..328544 Replicon chromosome
Accession NZ_CP109968
Organism Agrobacterium salinitolerans strain CFBP5507

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag CFBP5507_RS01565 Protein ID WP_137409826.1
Coordinates 328064..328333 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag CFBP5507_RS01570 Protein ID WP_077983309.1
Coordinates 328317..328544 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CFBP5507_RS01535 (CFBP5507_01535) 323128..323904 - 777 WP_137409822.1 L,D-transpeptidase -
CFBP5507_RS01540 (CFBP5507_01540) 324140..324769 + 630 WP_077983316.1 DNA-3-methyladenine glycosylase I -
CFBP5507_RS01545 (CFBP5507_01545) 324766..325209 + 444 WP_137409823.1 hypothetical protein -
CFBP5507_RS01550 (CFBP5507_01550) 325225..326268 - 1044 WP_089153242.1 YeiH family protein -
CFBP5507_RS01555 (CFBP5507_01555) 326350..327267 + 918 WP_137409824.1 LysR substrate-binding domain-containing protein -
CFBP5507_RS01560 (CFBP5507_01560) 327293..328057 - 765 WP_137409825.1 hypothetical protein -
CFBP5507_RS01565 (CFBP5507_01565) 328064..328333 - 270 WP_137409826.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CFBP5507_RS01570 (CFBP5507_01570) 328317..328544 - 228 WP_077983309.1 DUF6290 family protein Antitoxin
CFBP5507_RS01575 (CFBP5507_01575) 328781..330304 + 1524 WP_137409827.1 histidine--tRNA ligase -
CFBP5507_RS01580 (CFBP5507_01580) 330309..330677 + 369 WP_137409828.1 VOC family protein -
CFBP5507_RS01585 (CFBP5507_01585) 330694..331821 + 1128 WP_137409829.1 ATP phosphoribosyltransferase regulatory subunit -
CFBP5507_RS01590 (CFBP5507_01590) 331818..332510 + 693 WP_137409830.1 ATP phosphoribosyltransferase -
CFBP5507_RS01595 (CFBP5507_01595) 332569..333015 - 447 WP_137409831.1 DoxX family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(10-88)

Antitoxin

Protein of unknown function DUF6290

(6-73)


Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10713.34 Da        Isoelectric Point: 9.8259

>T262574 WP_137409826.1 NZ_CP109968:c328333-328064 [Agrobacterium salinitolerans]
VIWTIEYHTLVQKEMRKINPEVRRRIRSFLHERPAALDDPRQTGAALQGSELGNYWRYRVGDYRIICDIQDHKLVVLVVE
IGHRREIYR

Download         Length: 270 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8881.86 Da        Isoelectric Point: 4.5702

>AT262574 WP_077983309.1 NZ_CP109968:c328544-328317 [Agrobacterium salinitolerans]
MSKQTAIRLPDETYERLKALSERTGRTSAYYIREAIEKHIEDMEDLYLAEEATRRIQNGESKVISAEEFWRDLDN

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References