Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2004703..2004848 | Replicon | chromosome |
| Accession | NZ_CP109963 | ||
| Organism | Klebsiella pneumoniae isolate NY13307 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2004739..2004841 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2004703..2004848 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OJ970_RS09850 (OJ970_09850) | 1999833..2001893 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OJ970_RS09855 (OJ970_09855) | 2001897..2002556 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OJ970_RS09860 (OJ970_09860) | 2002635..2002865 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OJ970_RS09865 (OJ970_09865) | 2002978..2003352 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OJ970_RS09870 (OJ970_09870) | 2003356..2004225 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OJ970_RS09875 (OJ970_09875) | 2004242..2004580 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2004703..2004848 | - | 146 | - | - | Antitoxin |
| - | 2004739..2004841 | + | 103 | - | - | Toxin |
| OJ970_RS09880 (OJ970_09880) | 2005216..2005359 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OJ970_RS09885 (OJ970_09885) | 2005464..2006432 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OJ970_RS09890 (OJ970_09890) | 2006589..2007242 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OJ970_RS09895 (OJ970_09895) | 2007239..2007430 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OJ970_RS09900 (OJ970_09900) | 2007528..2007767 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OJ970_RS09905 (OJ970_09905) | 2007883..2009316 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T262555 NZ_CP109963:2004739-2004841 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT262555 NZ_CP109963:c2004848-2004703 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
