Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3492793..3492938 | Replicon | chromosome |
| Accession | NZ_CP109948 | ||
| Organism | Klebsiella pneumoniae strain KP1650 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3492800..3492902 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3492793..3492938 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OIS41_RS17400 (OIS41_17405) | 3488325..3489758 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OIS41_RS17405 (OIS41_17410) | 3489874..3490113 | + | 240 | WP_002911393.1 | YebV family protein | - |
| OIS41_RS17410 (OIS41_17415) | 3490211..3490402 | + | 192 | WP_002911395.1 | YebW family protein | - |
| OIS41_RS17415 (OIS41_17420) | 3490399..3491052 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OIS41_RS17420 (OIS41_17425) | 3491209..3492177 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OIS41_RS17425 (OIS41_17430) | 3492282..3492425 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3492793..3492938 | + | 146 | - | - | Antitoxin |
| - | 3492800..3492902 | - | 103 | - | - | Toxin |
| OIS41_RS17430 (OIS41_17435) | 3493061..3493399 | - | 339 | WP_002911404.1 | YebY family protein | - |
| OIS41_RS17435 (OIS41_17440) | 3493416..3494285 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OIS41_RS17440 (OIS41_17445) | 3494289..3494663 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OIS41_RS17445 (OIS41_17450) | 3494776..3495006 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OIS41_RS17450 (OIS41_17455) | 3495085..3495744 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OIS41_RS17455 (OIS41_17460) | 3495748..3497808 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T262496 NZ_CP109948:c3492902-3492800 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT262496 NZ_CP109948:3492793-3492938 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
