Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) phd-doc/Doc-RelB
Location 2041996..2042600 Replicon chromosome
Accession NZ_CP109947
Organism Pectobacterium cacticida strain CFCC10813

Toxin (Protein)


Gene name doc Uniprot ID -
Locus tag OI450_RS09415 Protein ID WP_264498821.1
Coordinates 2042214..2042600 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name phd Uniprot ID -
Locus tag OI450_RS09410 Protein ID WP_142501959.1
Coordinates 2041996..2042217 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OI450_RS09400 (OI450_09400) 2038049..2040232 + 2184 WP_264498819.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
OI450_RS09405 (OI450_09405) 2040463..2041470 + 1008 WP_264498820.1 hypothetical protein -
OI450_RS09410 (OI450_09410) 2041996..2042217 + 222 WP_142501959.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OI450_RS09415 (OI450_09415) 2042214..2042600 + 387 WP_264498821.1 type II toxin-antitoxin system death-on-curing family toxin Toxin
OI450_RS09420 (OI450_09420) 2042705..2044009 - 1305 WP_264498822.1 type II toxin-antitoxin system HipA family toxin YjjJ -
OI450_RS09425 (OI450_09425) 2044207..2044494 + 288 WP_264498823.1 VF530 family protein -
OI450_RS09430 (OI450_09430) 2044500..2045786 + 1287 WP_264498824.1 glycoside hydrolase family 10 protein -
OI450_RS09435 (OI450_09435) 2046053..2047438 + 1386 WP_264498825.1 diaminobutyrate--2-oxoglutarate transaminase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Fido domain

(3-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-53)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 14474.44 Da        Isoelectric Point: 7.3587

>T262489 WP_264498821.1 NZ_CP109947:2042214-2042600 [Pectobacterium cacticida]
MIWVSAQEVIAFHDRILQRFPGVAGLADPGRAQALIYRVQNRVHYEGVTALFELAATYWVAIARGHIFHDGNKRTAFFVT
MTFLWRNGIRIRDVDNSLENLTVEAATGEKSVDQLAQCLRERVDNSGN

Download         Length: 387 bp

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8067.01 Da        Isoelectric Point: 5.6232

>AT262489 WP_142501959.1 NZ_CP109947:2041996-2042217 [Pectobacterium cacticida]
MQTYTSTQARANISTVLDTALNGEPVEITRRDGSAAVLISKAAFEAYQNAKLDAEFDAIMQRHEHTIKALTDR

Download         Length: 222 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References