Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 752159..752819 Replicon chromosome
Accession NZ_CP109947
Organism Pectobacterium cacticida strain CFCC10813

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag OI450_RS03575 Protein ID WP_264497818.1
Coordinates 752406..752819 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag OI450_RS03570 Protein ID WP_264497817.1
Coordinates 752159..752425 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OI450_RS03550 (OI450_03550) 747687..748994 + 1308 WP_264497813.1 ABC transporter substrate-binding protein -
OI450_RS03555 (OI450_03555) 749144..749752 - 609 WP_264497814.1 HD domain-containing protein -
OI450_RS03560 (OI450_03560) 750124..750771 + 648 WP_264497815.1 hemolysin III family protein -
OI450_RS03565 (OI450_03565) 750922..751923 - 1002 WP_264497816.1 tRNA-modifying protein YgfZ -
OI450_RS03570 (OI450_03570) 752159..752425 + 267 WP_264497817.1 FAD assembly factor SdhE Antitoxin
OI450_RS03575 (OI450_03575) 752406..752819 + 414 WP_264497818.1 protein YgfX Toxin
OI450_RS03580 (OI450_03580) 752885..753820 + 936 WP_264497819.1 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF -
OI450_RS03585 (OI450_03585) 754112..754183 + 72 WP_264498862.1 type I toxin-antitoxin system SymE family toxin -
OI450_RS03590 (OI450_03590) 754258..754506 - 249 WP_264498863.1 hypothetical protein -
OI450_RS03595 (OI450_03595) 754856..755020 - 165 Protein_682 RHS repeat-associated core domain-containing protein -
OI450_RS03600 (OI450_03600) 755456..755935 - 480 WP_264497820.1 competence protein ComJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(2-132)

Antitoxin

Flavinator of succinate dehydrogenase

(8-79)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 16437.44 Da        Isoelectric Point: 11.1579

>T262485 WP_264497818.1 NZ_CP109947:752406-752819 [Pectobacterium cacticida]
VAQWQCDLRVSWRMQLLSLMVHGLLVLLILLAPWPDGYAWLWLCLVTMVMFGFIRSQRNIKSRHGEIALLSETTLDWRQQ
EWRIVKRPWLLKHGVLLSLQAVNGKDRRQLWLASDSMGEDEWRHLRQILLQQKRWAR

Download         Length: 414 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10518.92 Da        Isoelectric Point: 5.1244

>AT262485 WP_264497817.1 NZ_CP109947:752159-752425 [Pectobacterium cacticida]
MEIDNKSRIHWACRRGMRELDIAIMPFFEHDYDTLSDSDKHTFVRLLQSDDPDLFNWLMNHGEPQDEELKRMISLIQTRN
KDRGPVAM

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References