Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 958795..959281 | Replicon | chromosome |
Accession | NZ_CP109940 | ||
Organism | Streptococcus suis strain ID34572 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A0K2E5U8 |
Locus tag | OHM49_RS04785 | Protein ID | WP_002935012.1 |
Coordinates | 958795..959052 (-) | Length | 86 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A0K2E5B0 |
Locus tag | OHM49_RS04790 | Protein ID | WP_002935014.1 |
Coordinates | 959042..959281 (-) | Length | 80 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OHM49_RS04765 (OHM49_04765) | 954429..955499 | + | 1071 | WP_002935006.1 | tyrosine recombinase XerS | - |
OHM49_RS04770 (OHM49_04770) | 955569..957077 | - | 1509 | WP_013730362.1 | phosphoglucomutase | - |
OHM49_RS04775 (OHM49_04775) | 957153..958094 | - | 942 | WP_002935009.1 | sensor histidine kinase | - |
OHM49_RS04780 (OHM49_04780) | 958091..958756 | - | 666 | WP_009909826.1 | response regulator transcription factor | - |
OHM49_RS04785 (OHM49_04785) | 958795..959052 | - | 258 | WP_002935012.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
OHM49_RS04790 (OHM49_04790) | 959042..959281 | - | 240 | WP_002935014.1 | DUF6290 family protein | Antitoxin |
OHM49_RS04795 (OHM49_04795) | 959373..961343 | - | 1971 | WP_013730363.1 | FtsX-like permease family protein | - |
OHM49_RS04800 (OHM49_04800) | 961344..962096 | - | 753 | WP_172092511.1 | ABC transporter ATP-binding protein | - |
OHM49_RS04805 (OHM49_04805) | 962232..962966 | - | 735 | WP_011922410.1 | ABC transporter permease | - |
OHM49_RS04810 (OHM49_04810) | 962968..963714 | - | 747 | WP_011922411.1 | ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Integrative and Conjugative Element | - | - | 904895..979442 | 74547 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K2E5U8 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0K2E5B0 |