Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172692..2172963 | Replicon | chromosome |
| Accession | NZ_CP109924 | ||
| Organism | Escherichia coli O125ac:K+:H10 strain C 236-04A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172822..2172925 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172692..2172963 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N8A72_RS10530 | 2169247..2169909 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| N8A72_RS10535 | 2169933..2170589 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein YobB | - |
| N8A72_RS10540 | 2170691..2170921 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| N8A72_RS10545 | 2171060..2171434 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| N8A72_RS10550 | 2171438..2172310 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| N8A72_RS10555 | 2172323..2172664 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2172692..2172963 | - | 272 | - | - | Antitoxin |
| - | 2172822..2172925 | + | 104 | - | - | Toxin |
| N8A72_RS10560 | 2173060..2173716 | + | 657 | WP_000812740.1 | protein-serine/threonine phosphatase | - |
| N8A72_RS10565 | 2173717..2173908 | - | 192 | WP_001313035.1 | YebW family protein | - |
| N8A72_RS10570 | 2174013..2174249 | - | 237 | WP_001295499.1 | YebV family protein | - |
| N8A72_RS10575 | 2174367..2175806 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2167190..2189578 | 22388 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262380 NZ_CP109924:2172822-2172925 [Escherichia coli O125ac:K+:H10]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT262380 NZ_CP109924:c2172963-2172692 [Escherichia coli O125ac:K+:H10]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
