26233

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 2057609..2058168 Replicon chromosome
Accession NC_017059
Organism Rhodospirillum photometricum DSM 122

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag RSPPHO_RS18910 Protein ID WP_081581701.1
Coordinates 2057875..2058168 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag RSPPHO_RS09165 Protein ID WP_041794886.1
Coordinates 2057609..2057887 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RSPPHO_RS09140 2052758..2054482 + 1725 WP_014414967.1 PTS fructose-like transporter subunit IIB -
RSPPHO_RS09145 2054782..2055594 + 813 WP_041794878.1 uridine kinase -
RSPPHO_RS09150 2055608..2056429 + 822 WP_041794880.1 molybdenum storage protein subunit alpha -
RSPPHO_RS09155 2056565..2057167 + 603 WP_041794882.1 FecR family protein -
RSPPHO_RS09160 2057164..2057346 - 183 Protein_1846 IS481 family transposase -
RSPPHO_RS09165 2057609..2057887 + 279 WP_041794886.1 CopG family ribbon-helix-helix protein Antitoxin
RSPPHO_RS18910 2057875..2058168 + 294 WP_081581701.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
RSPPHO_RS18915 2058233..2058529 + 297 WP_197535598.1 transposase -
RSPPHO_RS09180 2059595..2060374 - 780 Protein_1850 IS5 family transposase -
RSPPHO_RS09185 2060582..2062375 - 1794 WP_014414973.1 DUF2326 domain-containing protein -
RSPPHO_RS09190 2062362..2062610 - 249 WP_041794890.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11274.96 Da        Isoelectric Point: 9.1095

>T26233 WP_081581701.1 NC_017059:2057875-2058168 [Pararhodospirillum photometricum DSM 122]
MSQVRFAPAAIRDLQRLRDFLRPKNPDAARRAGEAIRQGVKILSIHPHLGRMIDDLPEQFREWLIDFGESGYVARYRIDE
DAVIILVIRHQRESGCH

Download         Length: 294 bp

>T26233 NC_017059:2057875-2058168 [Pararhodospirillum photometricum DSM 122]
ATGTCACAAGTAAGATTTGCTCCGGCAGCAATCCGGGATCTGCAACGGTTGCGGGATTTTTTGCGACCGAAGAACCCTGA
CGCTGCACGTCGCGCCGGTGAAGCCATCCGCCAGGGCGTAAAGATCCTTAGCATACATCCTCATCTTGGCCGGATGATCG
ATGACTTGCCAGAACAGTTTAGAGAATGGCTCATCGACTTCGGCGAGAGCGGCTATGTCGCGCGATATCGGATTGACGAG
GATGCGGTGATCATTCTCGTGATCCGCCATCAGCGGGAATCTGGATGCCATTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10932.22 Da        Isoelectric Point: 5.6439

>AT26233 WP_041794886.1 NC_017059:2057609-2057887 [Pararhodospirillum photometricum DSM 122]
MASATSIKLDDDMKGRVRHLAEARQRTSHWIMREAILQYVEREEKREALRRDTVRAWEEFQETGLHATAEEVDRWLESWG
NDKELPAPECHK

Download         Length: 279 bp

>AT26233 NC_017059:2057609-2057887 [Pararhodospirillum photometricum DSM 122]
ATGGCATCTGCAACGTCCATCAAGCTCGATGACGATATGAAAGGCCGCGTCCGGCATCTTGCCGAAGCGCGGCAACGCAC
GTCGCATTGGATCATGCGGGAAGCGATCTTGCAGTATGTCGAACGTGAGGAGAAGCGTGAGGCATTGCGGCGTGACACAG
TGCGGGCTTGGGAAGAGTTTCAGGAAACCGGCCTTCACGCGACTGCTGAAGAGGTGGACCGCTGGCTGGAGAGCTGGGGA
AATGACAAAGAGTTGCCCGCGCCCGAATGTCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References