Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2196333..2196604 | Replicon | chromosome |
| Accession | NZ_CP109874 | ||
| Organism | Escherichia coli strain EC488 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2196463..2196566 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2196333..2196604 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NQ150_RS10395 | 2192888..2193550 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NQ150_RS10400 | 2193574..2194230 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NQ150_RS10405 | 2194332..2194562 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NQ150_RS10410 | 2194701..2195075 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| NQ150_RS10415 | 2195079..2195951 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| NQ150_RS10420 | 2195964..2196305 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2196333..2196604 | - | 272 | - | - | Antitoxin |
| - | 2196463..2196566 | + | 104 | - | - | Toxin |
| NQ150_RS10425 | 2196701..2197357 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| NQ150_RS10430 | 2197358..2197549 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NQ150_RS10435 | 2197654..2197890 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NQ150_RS10440 | 2198008..2199447 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262246 NZ_CP109874:2196463-2196566 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT262246 NZ_CP109874:c2196604-2196333 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
