Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 148743..149248 Replicon chromosome
Accession NZ_CP109849
Organism Pseudomonas aeruginosa strain PALA34

Toxin (Protein)


Gene name parE Uniprot ID A0A069QL22
Locus tag PALA34_RS00670 Protein ID WP_003121619.1
Coordinates 148743..149024 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID Q9I707
Locus tag PALA34_RS00675 Protein ID WP_003112628.1
Coordinates 149021..149248 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PALA34_RS00645 (PALA34_00127) 143994..145343 + 1350 WP_003119513.1 C4-dicarboxylate transporter DctA -
PALA34_RS00650 (PALA34_00128) 145392..146078 + 687 WP_003083762.1 FadR/GntR family transcriptional regulator -
PALA34_RS00655 (PALA34_00129) 146179..146913 + 735 WP_003117208.1 GntR family transcriptional regulator -
PALA34_RS00660 (PALA34_00130) 147093..147503 + 411 WP_003101225.1 aegerolysin family protein -
PALA34_RS00665 (PALA34_00131) 147535..148443 - 909 WP_016561475.1 LysR family transcriptional regulator -
PALA34_RS00670 (PALA34_00132) 148743..149024 - 282 WP_003121619.1 type II toxin-antitoxin system toxin ParE Toxin
PALA34_RS00675 (PALA34_00133) 149021..149248 - 228 WP_003112628.1 CopG family ribbon-helix-helix protein Antitoxin
PALA34_RS00680 (PALA34_00134) 149424..150044 - 621 WP_003101226.1 hypothetical protein -
PALA34_RS00685 (PALA34_00135) 150145..150645 + 501 WP_003112629.1 LEA type 2 family protein -
PALA34_RS00690 (PALA34_00136) 150718..151059 + 342 WP_003101229.1 zinc ribbon domain-containing protein YjdM -
PALA34_RS00695 (PALA34_00137) 151141..152568 - 1428 WP_003083784.1 GABA permease -
PALA34_RS00700 (PALA34_00138) 152737..154230 - 1494 WP_003083788.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Ribbon-helix-helix protein, CopG

(5-42)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10492.22 Da        Isoelectric Point: 10.0435

>T262198 WP_003121619.1 NZ_CP109849:c149024-148743 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDTIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Download         Length: 282 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8568.64 Da        Isoelectric Point: 5.5740

>AT262198 WP_003112628.1 NZ_CP109849:c149248-149021 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHIEIEKRWGLQ

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A069QL22

Antitoxin

Source ID Structure
PDB 6XRW
AlphaFold DB Q9I707

References