Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /Xre(antitoxin) |
Location | 4426046..4427303 | Replicon | chromosome |
Accession | NZ_CP109834 | ||
Organism | Pseudomonas aeruginosa strain PALA25 |
Toxin (Protein)
Gene name | - | Uniprot ID | Q9I4U4 |
Locus tag | PALA25_RS20470 | Protein ID | WP_003112528.1 |
Coordinates | 4426046..4426801 (-) | Length | 252 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | V6AJU7 |
Locus tag | PALA25_RS20475 | Protein ID | WP_003086329.1 |
Coordinates | 4426935..4427303 (-) | Length | 123 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PALA25_RS20460 (PALA25_04085) | 4421218..4423761 | + | 2544 | WP_003112526.1 | acyl-homoserine-lactone acylase QuiP | - |
PALA25_RS20465 (PALA25_04086) | 4423916..4425277 | - | 1362 | WP_095396852.1 | DNA recombination protein RmuC | - |
PALA25_RS20470 (PALA25_04087) | 4426046..4426801 | - | 756 | WP_003112528.1 | RES family NAD+ phosphorylase | Toxin |
PALA25_RS20475 (PALA25_04088) | 4426935..4427303 | - | 369 | WP_003086329.1 | DUF2384 domain-containing protein | Antitoxin |
PALA25_RS20480 (PALA25_04089) | 4427376..4428662 | - | 1287 | WP_075123144.1 | FAD-binding oxidoreductase | - |
PALA25_RS20485 (PALA25_04090) | 4428718..4430307 | - | 1590 | WP_003145542.1 | aldehyde dehydrogenase family protein | - |
PALA25_RS20490 (PALA25_04091) | 4430386..4430862 | + | 477 | WP_003140638.1 | hypothetical protein | - |
PALA25_RS20495 | 4430865..4431140 | - | 276 | WP_010792073.1 | zinc ribbon domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 252 a.a. Molecular weight: 28278.42 Da Isoelectric Point: 7.7294
>T262157 WP_003112528.1 NZ_CP109834:c4426801-4426046 [Pseudomonas aeruginosa]
VSEIWRQCKGERHIRPLQGRLVRLVESQEQVATLQLVDTLEEQALLEELLESSKPPVPADAEPLHYLLKTPFRYPPLRWG
SRFGRRHEPSLFYAALKLETAMAESAYYRCVLWSGMVVPPPSGRILSEHASFEAGWKVERGIRLQAPPFSDHEAALTDIA
DYRAPQELGSAMRSAGVQAFEYRSARCPERGCNVALFTPAAFTEKRPRNLTPWLCETTAGYVAFKPAHVPGSPKIFSWEL
FLVDGKLPHPA
VSEIWRQCKGERHIRPLQGRLVRLVESQEQVATLQLVDTLEEQALLEELLESSKPPVPADAEPLHYLLKTPFRYPPLRWG
SRFGRRHEPSLFYAALKLETAMAESAYYRCVLWSGMVVPPPSGRILSEHASFEAGWKVERGIRLQAPPFSDHEAALTDIA
DYRAPQELGSAMRSAGVQAFEYRSARCPERGCNVALFTPAAFTEKRPRNLTPWLCETTAGYVAFKPAHVPGSPKIFSWEL
FLVDGKLPHPA
Download Length: 756 bp
Antitoxin
Download Length: 123 a.a. Molecular weight: 13367.63 Da Isoelectric Point: 9.9874
>AT262157 WP_003086329.1 NZ_CP109834:c4427303-4426935 [Pseudomonas aeruginosa]
MSALIKERPSADAVLAKAVLAAREQLGLTQLELAGIVGVDRSAISRWKTQGLRVDSKTGELALLLVRVYRALYALFGGQQ
EDMRHFLRTPNHHLAGEPLALMGQVQGLVHVLEYLDAIRGKV
MSALIKERPSADAVLAKAVLAAREQLGLTQLELAGIVGVDRSAISRWKTQGLRVDSKTGELALLLVRVYRALYALFGGQQ
EDMRHFLRTPNHHLAGEPLALMGQVQGLVHVLEYLDAIRGKV
Download Length: 369 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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