Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006773..2006913 | Replicon | chromosome |
| Accession | NZ_CP109824 | ||
| Organism | Serratia marcescens strain SMBC31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006817..2006913 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006773..2006913 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHY99_RS09790 (OHY99_09790) | 2002043..2002438 | + | 396 | WP_049203470.1 | RidA family protein | - |
| OHY99_RS09795 (OHY99_09795) | 2002595..2003548 | + | 954 | WP_141997776.1 | prolyl aminopeptidase | - |
| OHY99_RS09800 (OHY99_09800) | 2003579..2003809 | - | 231 | WP_043141621.1 | DNA polymerase III subunit theta | - |
| OHY99_RS09805 (OHY99_09805) | 2004154..2004672 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| OHY99_RS09810 (OHY99_09810) | 2004997..2005380 | + | 384 | WP_043141618.1 | CopC domain-containing protein YobA | - |
| OHY99_RS09815 (OHY99_09815) | 2005383..2006264 | + | 882 | WP_049209425.1 | copper homeostasis membrane protein CopD | - |
| OHY99_RS09820 (OHY99_09820) | 2006334..2006675 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2006773..2006913 | - | 141 | - | - | Antitoxin |
| - | 2006817..2006913 | + | 97 | - | - | Toxin |
| OHY99_RS09825 (OHY99_09825) | 2007027..2007185 | - | 159 | WP_238476101.1 | hypothetical protein | - |
| OHY99_RS09830 (OHY99_09830) | 2007296..2008354 | + | 1059 | WP_197835490.1 | acyltransferase | - |
| OHY99_RS09835 (OHY99_09835) | 2009031..2010128 | + | 1098 | WP_264383917.1 | hypothetical protein | - |
| OHY99_RS09840 (OHY99_09840) | 2010135..2011172 | - | 1038 | WP_264383603.1 | IS630 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 2010135..2011172 | 1037 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T262134 NZ_CP109824:2006817-2006913 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT262134 NZ_CP109824:c2006913-2006773 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
