Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2434480..2434714 | Replicon | chromosome |
| Accession | NZ_CP109775 | ||
| Organism | Shigella sonnei strain CIP_106347 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2434481..2434584 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2434480..2434714 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OHN14_RS12530 | 2430914..2431174 | + | 261 | WP_077447296.1 | excisionase | - |
| OHN14_RS12535 | 2431203..2431657 | + | 455 | Protein_2453 | IS1-like element IS1A family transposase | - |
| OHN14_RS12540 | 2431752..2432980 | + | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| OHN14_RS12545 | 2432991..2433236 | + | 246 | Protein_2455 | IS1 family transposase | - |
| OHN14_RS12550 | 2433273..2434349 | + | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2434480..2434714 | + | 235 | - | - | Antitoxin |
| - | 2434481..2434584 | - | 104 | - | - | Toxin |
| OHN14_RS12555 | 2434742..2435083 | - | 342 | WP_000976476.1 | YebY family protein | - |
| OHN14_RS12560 | 2435096..2435968 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| OHN14_RS12565 | 2435972..2436346 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| OHN14_RS12570 | 2436485..2436715 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OHN14_RS12575 | 2436817..2437473 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OHN14_RS12580 | 2437497..2438159 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 2414818..2440216 | 25398 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262103 NZ_CP109775:c2434584-2434481 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT262103 NZ_CP109775:2434480-2434714 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
