Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3193867..3193956 Replicon chromosome
Accession NC_017047
Organism Rahnella aquatilis HX2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3193867..3193956 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3193867..3193956 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
Q7S_RS14350 3191475..3191876 - 402 Protein_2865 portal capsid protein Q -
Q7S_RS26085 3191874..3192111 + 238 Protein_2866 phage late control D family protein -
Q7S_RS14355 3192192..3192605 - 414 WP_013576171.1 GNAT family N-acetyltransferase -
Q7S_RS26090 3192753..3192973 + 221 Protein_2868 DNA-binding transcriptional regulator -
Q7S_RS14365 3193015..3193380 - 366 WP_013576172.1 hypothetical protein -
Q7S_RS26395 3193636..3193803 + 168 Protein_2870 integrase -
- 3193867..3193956 - 90 - - Toxin
Q7S_RS14370 3194112..3194447 - 336 WP_013576173.1 YebY family protein -
Q7S_RS14375 3194498..3195382 - 885 WP_013576174.1 copper homeostasis membrane protein CopD -
Q7S_RS14380 3195386..3195769 - 384 WP_013576175.1 copper homeostasis periplasmic binding protein CopC -
Q7S_RS14385 3195911..3196417 - 507 WP_013576176.1 non-heme ferritin -
Q7S_RS14390 3196824..3197054 + 231 WP_013576177.1 DNA polymerase III subunit theta -
Q7S_RS14395 3197074..3198030 - 957 WP_013576178.1 prolyl aminopeptidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 90 bp

>T26210 NC_017047:c3193956-3193867 [Rahnella aquatilis HX2]
GCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATCGTATTCG
GTCTTTTTTT

Antitoxin


Download         Length: 90 bp

>AT26210 NC_017047:3193867-3193956 [Rahnella aquatilis HX2]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TAATGCAGGC

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References