Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1968151..1968296 | Replicon | chromosome |
| Accession | NZ_CP109772 | ||
| Organism | Klebsiella pneumoniae strain YZ-58 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1968187..1968289 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1968151..1968296 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M4Z05_RS09950 (M4Z05_09950) | 1963281..1965341 | + | 2061 | WP_032420218.1 | oligopeptidase B | - |
| M4Z05_RS09955 (M4Z05_09955) | 1965345..1966004 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| M4Z05_RS09960 (M4Z05_09960) | 1966083..1966313 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| M4Z05_RS09965 (M4Z05_09965) | 1966426..1966800 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| M4Z05_RS09970 (M4Z05_09970) | 1966804..1967673 | + | 870 | WP_032420215.1 | copper homeostasis membrane protein CopD | - |
| M4Z05_RS09975 (M4Z05_09975) | 1967690..1968028 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1968151..1968296 | - | 146 | - | - | Antitoxin |
| - | 1968187..1968289 | + | 103 | - | - | Toxin |
| M4Z05_RS09980 (M4Z05_09980) | 1968664..1968807 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| M4Z05_RS09985 (M4Z05_09985) | 1968912..1969880 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| M4Z05_RS09990 (M4Z05_09990) | 1970037..1970690 | + | 654 | WP_064149174.1 | protein-serine/threonine phosphatase | - |
| M4Z05_RS09995 (M4Z05_09995) | 1970687..1970878 | - | 192 | WP_002911395.1 | YebW family protein | - |
| M4Z05_RS10000 (M4Z05_10000) | 1970976..1971215 | - | 240 | WP_002911393.1 | YebV family protein | - |
| M4Z05_RS10005 (M4Z05_10005) | 1971331..1972764 | - | 1434 | WP_064149175.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T262085 NZ_CP109772:1968187-1968289 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT262085 NZ_CP109772:c1968296-1968151 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
