Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4568346..4568489 | Replicon | chromosome |
| Accession | NZ_CP109753 | ||
| Organism | Enterobacter roggenkampii strain 2017-45-131-01A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4568381..4568484 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4568346..4568489 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OI984_RS22235 (OI984_22230) | 4564829..4565491 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| OI984_RS22240 (OI984_22235) | 4565516..4566166 | - | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| OI984_RS22245 (OI984_22240) | 4566277..4566507 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OI984_RS22250 (OI984_22245) | 4566645..4567016 | + | 372 | WP_045352265.1 | CopC domain-containing protein YobA | - |
| OI984_RS22255 (OI984_22250) | 4567018..4567887 | + | 870 | WP_008500467.1 | copper homeostasis membrane protein CopD | - |
| OI984_RS22260 (OI984_22255) | 4567904..4568242 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 4568346..4568489 | - | 144 | - | - | Antitoxin |
| - | 4568381..4568484 | + | 104 | - | - | Toxin |
| OI984_RS22265 (OI984_22260) | 4568648..4569589 | - | 942 | WP_021240429.1 | VirK/YbjX family protein | - |
| OI984_RS22270 (OI984_22265) | 4569756..4570400 | + | 645 | WP_023325510.1 | protein-serine/threonine phosphatase | - |
| OI984_RS22275 (OI984_22270) | 4570435..4570674 | - | 240 | WP_008500472.1 | YebV family protein | - |
| OI984_RS22280 (OI984_22275) | 4570781..4572223 | - | 1443 | WP_045352262.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T262071 NZ_CP109753:4568381-4568484 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT262071 NZ_CP109753:c4568489-4568346 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
