Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 4164819..4165345 Replicon chromosome
Accession NZ_CP109692
Organism Enterobacter asburiae strain 2017-45-80

Toxin (Protein)


Gene name relE Uniprot ID S1EXL1
Locus tag OI907_RS20410 Protein ID WP_000323025.1
Coordinates 4165058..4165345 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID S1F6D3
Locus tag OI907_RS20405 Protein ID WP_000534858.1
Coordinates 4164819..4165058 (+) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OI907_RS20375 (OI907_20355) 4160853..4161425 - 573 WP_008500940.1 elongation factor P-like protein YeiP -
OI907_RS20380 (OI907_20360) 4161590..4161844 + 255 WP_033146563.1 YkgJ family cysteine cluster protein -
OI907_RS20385 (OI907_20365) 4161841..4162101 - 261 Protein_3888 MFS transporter -
OI907_RS20390 (OI907_20370) 4162177..4163517 + 1341 WP_004196353.1 IS1202-like element ISEsa1 family transposase -
OI907_RS20395 (OI907_20375) 4163954..4164286 - 333 WP_001317460.1 FlxA-like family protein -
OI907_RS20400 (OI907_20380) 4164489..4164794 - 306 WP_001326990.1 protein YdfV -
OI907_RS20405 (OI907_20385) 4164819..4165058 + 240 WP_000534858.1 type II toxin-antitoxin system antitoxin RelB Antitoxin
OI907_RS20410 (OI907_20390) 4165058..4165345 + 288 WP_000323025.1 type II toxin-antitoxin system mRNA interferase RelE Toxin
OI907_RS20415 (OI907_20395) 4165404..4166339 - 936 Protein_3894 MFS transporter -
OI907_RS20420 (OI907_20400) 4166701..4167831 + 1131 WP_033146038.1 fused PTS fructose transporter subunit IIA/HPr protein -
OI907_RS20425 (OI907_20405) 4167831..4168769 + 939 WP_014170919.1 1-phosphofructokinase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-86)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11225.22 Da        Isoelectric Point: 10.1967

>T261988 WP_000323025.1 NZ_CP109692:4165058-4165345 [Enterobacter asburiae]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9071.48 Da        Isoelectric Point: 4.5230

>AT261988 WP_000534858.1 NZ_CP109692:4164819-4165058 [Enterobacter asburiae]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4V7K
PDB 4V7J
PDB 4FXI
PDB 4FXE
PDB 2KC8
PDB 4FXH
PDB 2KC9

Antitoxin

Source ID Structure
PDB 4FXE
PDB 2KC8
PDB 2K29
AlphaFold DB A0A4V1CTS8

References