Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979067..1979212 | Replicon | chromosome |
| Accession | NZ_CP109607 | ||
| Organism | Klebsiella pneumoniae strain KP18-231 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979103..1979205 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979067..1979212 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGW23_RS09650 (OGW23_09650) | 1974197..1976257 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OGW23_RS09655 (OGW23_09655) | 1976261..1976920 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| OGW23_RS09660 (OGW23_09660) | 1976999..1977229 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OGW23_RS09665 (OGW23_09665) | 1977342..1977716 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OGW23_RS09670 (OGW23_09670) | 1977720..1978589 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| OGW23_RS09675 (OGW23_09675) | 1978606..1978944 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1979067..1979212 | - | 146 | - | - | Antitoxin |
| - | 1979103..1979205 | + | 103 | - | - | Toxin |
| OGW23_RS09680 (OGW23_09680) | 1979580..1979723 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OGW23_RS09685 (OGW23_09685) | 1979828..1980796 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OGW23_RS09690 (OGW23_09690) | 1980953..1981606 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| OGW23_RS09695 (OGW23_09695) | 1981603..1981794 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OGW23_RS09700 (OGW23_09700) | 1981892..1982131 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OGW23_RS09705 (OGW23_09705) | 1982247..1983680 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261908 NZ_CP109607:1979103-1979205 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261908 NZ_CP109607:c1979212-1979067 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
