Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/- |
Location | 4216581..4217781 | Replicon | chromosome |
Accession | NZ_CP109606 | ||
Organism | Pseudomonas putida strain QH1 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | OGV21_RS19105 | Protein ID | WP_071984576.1 |
Coordinates | 4217215..4217781 (+) | Length | 189 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | OGV21_RS19100 | Protein ID | WP_264316346.1 |
Coordinates | 4216581..4217150 (+) | Length | 190 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
OGV21_RS19085 | 4212875..4213948 | + | 1074 | WP_060493897.1 | microcin C ABC transporter permease YejB | - |
OGV21_RS19090 | 4213950..4214969 | + | 1020 | WP_012273316.1 | ABC transporter permease | - |
OGV21_RS19095 | 4214971..4216578 | + | 1608 | WP_012273317.1 | ABC transporter ATP-binding protein | - |
OGV21_RS19100 | 4216581..4217150 | + | 570 | WP_264316346.1 | helix-turn-helix transcriptional regulator | Antitoxin |
OGV21_RS19105 | 4217215..4217781 | + | 567 | WP_071984576.1 | HD domain-containing protein | Toxin |
OGV21_RS19110 | 4217923..4220853 | + | 2931 | WP_264316347.1 | aminotransferase | - |
OGV21_RS19115 | 4220857..4222092 | - | 1236 | WP_060493899.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 189 a.a. Molecular weight: 21024.77 Da Isoelectric Point: 5.5835
>T261901 WP_071984576.1 NZ_CP109606:4217215-4217781 [Pseudomonas putida]
MPNHNLHGKLDFLRQAEKLKNVTRSAHTSTGRRESTAEHSWRLALLALVFEQELGDVDICKVLKLCLVHDLGEALSGDVP
APQAHAVPDKGTNERQDLVAMTSMLEPSMQDSIVGLFDEYEAASTPEAKVVKALDKIETLLQHTQGDNPPGFDYAFNLEY
GRRYTDAIPFLASLRRVIDEETRKRLNS
MPNHNLHGKLDFLRQAEKLKNVTRSAHTSTGRRESTAEHSWRLALLALVFEQELGDVDICKVLKLCLVHDLGEALSGDVP
APQAHAVPDKGTNERQDLVAMTSMLEPSMQDSIVGLFDEYEAASTPEAKVVKALDKIETLLQHTQGDNPPGFDYAFNLEY
GRRYTDAIPFLASLRRVIDEETRKRLNS
Download Length: 567 bp
Antitoxin
Download Length: 190 a.a. Molecular weight: 20696.50 Da Isoelectric Point: 7.1490
>AT261901 WP_264316346.1 NZ_CP109606:4216581-4217150 [Pseudomonas putida]
MNTSPSLRSTPIGPLLKHWRLLNRVKQLHAAQMFGVCQSTISRWESGAQDAEPEQRARIEALLKAKLSSAADHALARLVS
GSSQPVHLVCDLTHRLLACSPSREAEFSVPISDLLGVSLWPFATEEIASQEQRLAGIGWHDNQASPALEFTTGTNDSALV
PIQHSLCRWTRFTLSDGSTARLVETLAHI
MNTSPSLRSTPIGPLLKHWRLLNRVKQLHAAQMFGVCQSTISRWESGAQDAEPEQRARIEALLKAKLSSAADHALARLVS
GSSQPVHLVCDLTHRLLACSPSREAEFSVPISDLLGVSLWPFATEEIASQEQRLAGIGWHDNQASPALEFTTGTNDSALV
PIQHSLCRWTRFTLSDGSTARLVETLAHI
Download Length: 570 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|