261898

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 313110..313712 Replicon chromosome
Accession NZ_CP109606
Organism Pseudomonas putida strain QH1

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag OGV21_RS01380 Protein ID WP_179027120.1
Coordinates 313110..313400 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag OGV21_RS01385 Protein ID WP_060493523.1
Coordinates 313410..313712 (+) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OGV21_RS01360 308599..309372 - 774 WP_003257472.1 ABC transporter ATP-binding protein -
OGV21_RS01365 310014..311399 + 1386 WP_012270085.1 GABA permease -
OGV21_RS01370 311476..311919 - 444 WP_264316738.1 hypothetical protein -
OGV21_RS01375 311980..312960 - 981 WP_264316739.1 polyphosphate kinase 2 -
OGV21_RS01380 313110..313400 + 291 WP_179027120.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
OGV21_RS01385 313410..313712 + 303 WP_060493523.1 putative addiction module antidote protein Antitoxin
OGV21_RS01395 314015..314287 - 273 WP_003255742.1 oxidative damage protection protein -
OGV21_RS01400 314284..315351 - 1068 WP_060493522.1 A/G-specific adenine glycosylase -
OGV21_RS01405 315348..317594 - 2247 WP_264316740.1 AsmA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(1-96)

Antitoxin

Uncharacterized protein HI1420

(4-93)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 10851.65 Da        Isoelectric Point: 10.7046

>T261898 WP_179027120.1 NZ_CP109606:313110-313400 [Pseudomonas putida]
MHTLIQTDTYRTWFAALRDPRAKARITVRLRRVGLGVMGDCRPVAEGVSELRIDYGPGYRVYFVRRGYEVIILLAGGDKA
SQARDIKSALKLARDL

Download         Length: 291 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 10730.49 Da        Isoelectric Point: 5.1131

>AT261898 WP_060493523.1 NZ_CP109606:313410-313712 [Pseudomonas putida]
MKNIKLTKWDAVDHLKTEEDMVLYLEACLEENDPALLAAALGDIARARGMAQLARDTGLTREGLYKALSAEGNPSLATIM
KVMAALGVRLHAEVLPPTAG

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References