Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1912435..1912580 | Replicon | chromosome |
| Accession | NZ_CP109604 | ||
| Organism | Klebsiella pneumoniae strain KP2022 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1912471..1912573 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1912435..1912580 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KP2022_RS09380 | 1907565..1909625 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| KP2022_RS09385 | 1909629..1910288 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| KP2022_RS09390 | 1910367..1910597 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| KP2022_RS09395 | 1910710..1911084 | + | 375 | WP_048279882.1 | CopC domain-containing protein YobA | - |
| KP2022_RS09400 | 1911088..1911957 | + | 870 | WP_048279880.1 | copper homeostasis membrane protein CopD | - |
| KP2022_RS09405 | 1911974..1912312 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1912435..1912580 | - | 146 | - | - | Antitoxin |
| - | 1912471..1912573 | + | 103 | - | - | Toxin |
| KP2022_RS09410 | 1912948..1913091 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| KP2022_RS09415 | 1913196..1914164 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| KP2022_RS09420 | 1914321..1914974 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| KP2022_RS09425 | 1914971..1915162 | - | 192 | WP_002911395.1 | YebW family protein | - |
| KP2022_RS09430 | 1915260..1915499 | - | 240 | WP_002911393.1 | YebV family protein | - |
| KP2022_RS09435 | 1915615..1917048 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T261887 NZ_CP109604:1912471-1912573 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT261887 NZ_CP109604:c1912580-1912435 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
